Variant report

Variant	rs7939959
Chromosome Location	chr11:35357176-35357177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34930292..34932707-chr11:35355903..35358489,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10488811	1.00[AMR][1000 genomes]
rs12280375	1.00[AMR][1000 genomes]
rs16927100	1.00[AMR][1000 genomes]
rs3847610	1.00[AMR][1000 genomes]
rs3847611	1.00[AMR][1000 genomes]
rs57427719	1.00[AMR][1000 genomes]
rs61045842	1.00[AMR][1000 genomes]
rs61142335	1.00[AMR][1000 genomes]
rs6484779	1.00[AMR][1000 genomes]
rs6484780	1.00[AMR][1000 genomes]
rs6484782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6484783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7102654	1.00[AMR][1000 genomes]
rs7103913	1.00[AMR][1000 genomes]
rs7114260	1.00[AMR][1000 genomes]
rs7121622	1.00[AMR][1000 genomes]
rs7130549	1.00[AMR][1000 genomes]
rs7131062	1.00[AMR][1000 genomes]
rs724474	1.00[AMR][1000 genomes]
rs73436972	1.00[AMR][1000 genomes]
rs73436976	1.00[AMR][1000 genomes]
rs73439121	1.00[AMR][1000 genomes]
rs73439149	1.00[AMR][1000 genomes]
rs7926777	1.00[ASW][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7926910	0.83[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7927023	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7927263	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7934506	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7936164	1.00[AMR][1000 genomes]
rs7939095	1.00[AMR][1000 genomes]
rs7939877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7940317	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945276	1.00[AMR][1000 genomes]
rs7949171	0.80[MKK][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs7952042	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35339000-35358000	Weak transcription	HepG2	liver
2	chr11:35348400-35358000	Weak transcription	Hela-S3	cervix
3	chr11:35350400-35358200	Weak transcription	Placenta	Placenta
4	chr11:35351400-35357200	Enhancers	Primary B cells from peripheral blood	blood
5	chr11:35352800-35361600	Weak transcription	Left Ventricle	heart
6	chr11:35353000-35361600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:35353800-35358400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr11:35353800-35359000	Weak transcription	K562	blood
9	chr11:35354000-35359200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:35354000-35359800	Weak transcription	Pancreas	Pancrea
11	chr11:35354000-35367800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:35354400-35358000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:35354400-35366000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:35354600-35358000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:35354600-35358000	Weak transcription	Brain Hippocampus Middle	brain
16	chr11:35354600-35358800	Weak transcription	Brain Anterior Caudate	brain
17	chr11:35354600-35359000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:35354600-35361600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:35354600-35366000	Weak transcription	Brain Substantia Nigra	brain
20	chr11:35354800-35363200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr11:35355600-35357400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:35355600-35357400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:35355800-35357200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:35356000-35357200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:35356000-35357400	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr11:35356000-35357400	Enhancers	NHDF-Ad	bronchial
27	chr11:35356200-35357400	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr11:35356400-35358200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:35356400-35359000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:35356800-35358000	Weak transcription	HMEC	breast
31	chr11:35356800-35358000	Weak transcription	NHEK	skin
32	chr11:35356800-35358000	Weak transcription	NHLF	lung
33	chr11:35357000-35357200	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr11:35357000-35358000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:35357000-35358000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:35357000-35358000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr11:35357000-35364000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links