Variant report

Variant	rs7945276
Chromosome Location	chr11:35346158-35346159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:35324131..35326995-chr11:35344530..35347090,2	MCF-7	breast:
2	chr11:35345419..35347819-chr11:35411682..35413495,2	MCF-7	breast:
3	chr11:35342453..35346425-chr11:35381907..35387258,7	MCF-7	breast:
4	chr11:35344560..35346248-chr11:35411918..35413925,2	MCF-7	breast:
5	chr11:35342676..35347000-chr11:35384036..35388623,5	MCF-7	breast:
6	chr11:35345567..35348254-chr11:35351098..35354051,2	K562	blood:
7	chr11:35315979..35318864-chr11:35345631..35348466,2	MCF-7	breast:
8	chr11:35344472..35346445-chr11:35423970..35426429,2	MCF-7	breast:
9	chr11:35345181..35347879-chr11:35376874..35378996,2	MCF-7	breast:

No data

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10488811	1.00[AMR][1000 genomes]
rs12280375	1.00[AMR][1000 genomes]
rs16927100	1.00[AMR][1000 genomes]
rs3847610	1.00[AMR][1000 genomes]
rs3847611	1.00[AMR][1000 genomes]
rs57427719	1.00[AMR][1000 genomes]
rs61045842	1.00[AMR][1000 genomes]
rs61142335	1.00[AMR][1000 genomes]
rs6484779	1.00[AMR][1000 genomes]
rs6484780	1.00[AMR][1000 genomes]
rs6484782	1.00[AMR][1000 genomes]
rs6484783	1.00[AMR][1000 genomes]
rs7102654	1.00[AMR][1000 genomes]
rs7103913	1.00[AMR][1000 genomes]
rs7114260	1.00[AMR][1000 genomes]
rs7121622	1.00[AMR][1000 genomes]
rs7130549	1.00[AMR][1000 genomes]
rs7131062	1.00[AMR][1000 genomes]
rs724474	1.00[AMR][1000 genomes]
rs73436972	1.00[AMR][1000 genomes]
rs73436976	1.00[AMR][1000 genomes]
rs73439121	1.00[AMR][1000 genomes]
rs73439149	1.00[AMR][1000 genomes]
rs7926777	1.00[AMR][1000 genomes]
rs7926910	1.00[AMR][1000 genomes]
rs7927023	1.00[AMR][1000 genomes]
rs7927263	1.00[AMR][1000 genomes]
rs7934506	1.00[AMR][1000 genomes]
rs7936164	1.00[AMR][1000 genomes]
rs7939095	1.00[AMR][1000 genomes]
rs7939877	1.00[AMR][1000 genomes]
rs7939959	1.00[AMR][1000 genomes]
rs7940317	1.00[AMR][1000 genomes]
rs7949171	1.00[AMR][1000 genomes]
rs7952042	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35339000-35358000	Weak transcription	HepG2	liver
2	chr11:35340400-35348400	Enhancers	NHDF-Ad	bronchial
3	chr11:35340600-35347600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:35341200-35351200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr11:35341200-35351400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:35341400-35346200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:35341400-35349400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr11:35341400-35350200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr11:35341400-35351400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr11:35342000-35348600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:35342200-35346400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr11:35342400-35347000	Enhancers	HSMM	muscle
13	chr11:35342600-35351400	Weak transcription	Brain Angular Gyrus	brain
14	chr11:35343000-35346200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:35343000-35347000	Enhancers	HSMMtube	muscle
16	chr11:35343200-35347000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr11:35343800-35346400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr11:35343800-35351200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:35344200-35352600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:35344400-35350400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:35344400-35351600	Weak transcription	Fetal Brain Male	brain
22	chr11:35344400-35352000	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:35344400-35352600	Weak transcription	Gastric	stomach
24	chr11:35344400-35353200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:35344600-35346400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:35344600-35346400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr11:35344600-35346600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:35344600-35347800	Weak transcription	Brain Anterior Caudate	brain
29	chr11:35344600-35350000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:35344600-35351200	Weak transcription	Left Ventricle	heart
31	chr11:35344800-35346200	Weak transcription	Osteobl	bone
32	chr11:35344800-35347600	Weak transcription	Placenta	Placenta
33	chr11:35345000-35346400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:35345000-35346600	Weak transcription	NH-A	brain
35	chr11:35345200-35346200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:35345200-35346400	Weak transcription	NHEK	skin
37	chr11:35345400-35346800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:35345400-35347600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr11:35345400-35347600	Weak transcription	Hela-S3	cervix
40	chr11:35345600-35347000	Enhancers	NHLF	lung
41	chr11:35345600-35349400	Weak transcription	Psoas Muscle	Psoas
42	chr11:35345800-35347800	Weak transcription	Pancreas	Pancrea
43	chr11:35346000-35346800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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