Variant report

Variant	rs7130549
Chromosome Location	chr11:35231627-35231628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:35228224-35231799	PANC-1	pancreas:	n/a	n/a
2	POLR2A	chr11:35230042-35231710	A549	lung:	n/a	n/a
3	POLR2A	chr11:35227002-35231718	GM18505	blood:	n/a	n/a
4	POLR2A	chr11:35220350-35237256	U87	brain:	n/a	n/a
5	POLR2A	chr11:35228321-35231788	IMR90	lung:	n/a	n/a
6	POLR2A	chr11:35227925-35231830	GM12891	blood:	n/a	n/a
7	POLR2A	chr11:35220356-35243977	U87	brain:	n/a	n/a
8	POLR2A	chr11:35230985-35231835	GM12891	blood:	n/a	n/a
9	POLR2A	chr11:35228208-35231843	GM12892	blood:	n/a	n/a
10	POLR2A	chr11:35221514-35231912	PANC-1	pancreas:	n/a	n/a
11	POLR2A	chr11:35225807-35231873	GM12892	blood:	n/a	n/a
12	POLR2A	chr11:35228059-35231671	GM12891	blood:	n/a	n/a
13	POLR2A	chr11:35225287-35231831	GM12892	blood:	n/a	n/a
14	POLR2A	chr11:35225125-35231811	GM12891	blood:	n/a	n/a
15	POLR2A	chr11:35228210-35231834	GM12892	blood:	n/a	n/a
16	POLR2A	chr11:35228191-35231929	U87	brain:	n/a	n/a

Variant related genes	Relation type
CD44	TF binding region
ENSG00000251194	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10488811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280375	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16927100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3847610	1.00[AMR][1000 genomes]
rs3847611	1.00[AMR][1000 genomes]
rs57427719	1.00[AMR][1000 genomes]
rs61045842	1.00[AMR][1000 genomes]
rs61142335	1.00[AMR][1000 genomes]
rs6484779	1.00[AMR][1000 genomes]
rs6484780	1.00[AMR][1000 genomes]
rs6484782	1.00[AMR][1000 genomes]
rs6484783	1.00[AMR][1000 genomes]
rs7102654	1.00[AMR][1000 genomes]
rs7103913	1.00[AMR][1000 genomes]
rs7114260	1.00[AMR][1000 genomes]
rs7121622	1.00[AMR][1000 genomes]
rs7131062	1.00[AMR][1000 genomes]
rs724474	1.00[AMR][1000 genomes]
rs73436972	1.00[AMR][1000 genomes]
rs73436976	1.00[AMR][1000 genomes]
rs73439121	1.00[AMR][1000 genomes]
rs73439149	1.00[AMR][1000 genomes]
rs7926777	1.00[AMR][1000 genomes]
rs7926910	1.00[AMR][1000 genomes]
rs7927023	1.00[AMR][1000 genomes]
rs7927263	1.00[AMR][1000 genomes]
rs7934506	1.00[AMR][1000 genomes]
rs7936164	1.00[AMR][1000 genomes]
rs7939095	1.00[AMR][1000 genomes]
rs7939877	1.00[AMR][1000 genomes]
rs7939959	1.00[AMR][1000 genomes]
rs7940317	1.00[AMR][1000 genomes]
rs7945276	1.00[AMR][1000 genomes]
rs7949171	1.00[AMR][1000 genomes]
rs7952042	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2757437	chr11:35067482-35238578	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv2752912	chr11:35074167-35238578	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv541003	chr11:35122694-35261451	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35198000-35232800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr11:35200600-35244800	Weak transcription	Fetal Brain Male	brain
3	chr11:35202600-35234000	Strong transcription	HMEC	breast
4	chr11:35202600-35234000	Strong transcription	HSMM	muscle
5	chr11:35202600-35234800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:35204600-35235200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:35209000-35234800	Strong transcription	NHEK	skin
8	chr11:35210000-35232600	Strong transcription	Primary B cells from peripheral blood	blood
9	chr11:35212400-35236400	Weak transcription	HSMMtube	muscle
10	chr11:35213200-35234000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:35214200-35238400	Weak transcription	Gastric	stomach
12	chr11:35214200-35240800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:35214600-35235200	Weak transcription	HUVEC	blood vessel
14	chr11:35214600-35250600	Weak transcription	Fetal Intestine Large	intestine
15	chr11:35214800-35236000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:35215600-35234600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:35215600-35241200	Weak transcription	Small Intestine	intestine
18	chr11:35216200-35234000	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr11:35222600-35240600	Weak transcription	Spleen	Spleen
20	chr11:35222800-35236400	Weak transcription	Psoas Muscle	Psoas
21	chr11:35223000-35236600	Weak transcription	Placenta	Placenta
22	chr11:35223400-35234600	Weak transcription	Fetal Stomach	stomach
23	chr11:35223400-35235000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:35223400-35238400	Weak transcription	Esophagus	oesophagus
25	chr11:35224000-35241600	Weak transcription	Left Ventricle	heart
26	chr11:35224600-35232800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:35225000-35231800	Strong transcription	Fetal Thymus	thymus
28	chr11:35225400-35232400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:35225400-35232600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:35225400-35234400	Strong transcription	Duodenum Mucosa	Duodenum
31	chr11:35225600-35233000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:35225600-35234800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr11:35225800-35233000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr11:35226000-35232800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr11:35226000-35233000	Strong transcription	Fetal Muscle Trunk	muscle
36	chr11:35226000-35234200	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr11:35226200-35244800	Weak transcription	Brain Substantia Nigra	brain
38	chr11:35227800-35232600	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr11:35227800-35237600	Weak transcription	Pancreas	Pancrea
40	chr11:35227800-35240400	Weak transcription	Colonic Mucosa	Colon
41	chr11:35228000-35232400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr11:35228400-35237600	Weak transcription	Thymus	Thymus
43	chr11:35229200-35233000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
44	chr11:35229200-35233000	Strong transcription	A549	lung
45	chr11:35229200-35237600	Weak transcription	Lung	lung
46	chr11:35229400-35235800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr11:35229600-35232400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:35229600-35233000	Strong transcription	Rectal Smooth Muscle	rectum
49	chr11:35229600-35233000	Strong transcription	Dnd41	blood
50	chr11:35229600-35233400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links