Variant report

Variant	rs71574647
Chromosome Location	chr6:133569517-133569518
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133564949..133567622-chr6:133568456..133570501,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPS12-6	chr6:133568002-133569991	NONHSAT114990

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11154720	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13194374	1.00[ASN][1000 genomes]
rs13212740	1.00[ASN][1000 genomes]
rs13218103	1.00[ASN][1000 genomes]
rs13218570	1.00[ASN][1000 genomes]
rs17062322	1.00[ASN][1000 genomes]
rs17062356	1.00[ASN][1000 genomes]
rs17242354	1.00[ASN][1000 genomes]
rs34018528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34304122	0.95[EUR][1000 genomes]
rs34353709	1.00[ASN][1000 genomes]
rs34395775	1.00[ASN][1000 genomes]
rs34585135	1.00[ASN][1000 genomes]
rs34804693	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34895585	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35350600	1.00[ASN][1000 genomes]
rs35677071	1.00[ASN][1000 genomes]
rs58707513	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569875	1.00[ASN][1000 genomes]
rs66480937	1.00[ASN][1000 genomes]
rs67684955	1.00[ASN][1000 genomes]
rs6923945	1.00[ASN][1000 genomes]
rs6926046	1.00[ASN][1000 genomes]
rs6940715	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71574648	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71574649	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72991903	1.00[ASN][1000 genomes]
rs72991923	1.00[ASN][1000 genomes]
rs72993984	1.00[ASN][1000 genomes]
rs72993996	1.00[ASN][1000 genomes]
rs7747163	1.00[ASN][1000 genomes]
rs7747638	1.00[ASN][1000 genomes]
rs9493599	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470862	chr6:133492507-133600402	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv886678	chr6:133550279-133631190	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv5483	chr6:133554303-133599338	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133565200-133570800	Weak transcription	Psoas Muscle	Psoas
2	chr6:133567000-133570600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:133567000-133571200	Enhancers	A549	lung
4	chr6:133567400-133583600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:133568400-133569800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr6:133569000-133569800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:133569000-133569800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:133569000-133570000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:133569000-133570000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr6:133569400-133569600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:133569400-133570000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:133569400-133570000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:133569400-133570400	Enhancers	Hela-S3	cervix

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