Variant report

Variant	rs7747638
Chromosome Location	chr6:133603821-133603822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11154720	1.00[ASN][1000 genomes]
rs13194374	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13212740	1.00[ASN][1000 genomes]
rs13218103	1.00[ASN][1000 genomes]
rs13218570	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17062322	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs17062356	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17242354	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34018528	1.00[ASN][1000 genomes]
rs34353709	1.00[ASN][1000 genomes]
rs34395775	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34585135	1.00[ASN][1000 genomes]
rs34804693	1.00[ASN][1000 genomes]
rs34895585	1.00[ASN][1000 genomes]
rs35350600	1.00[ASN][1000 genomes]
rs35677071	1.00[ASN][1000 genomes]
rs56321302	0.86[AFR][1000 genomes]
rs58707513	1.00[ASN][1000 genomes]
rs6569875	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66480937	1.00[ASN][1000 genomes]
rs67684955	1.00[ASN][1000 genomes]
rs6923945	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926046	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6940715	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs71574647	1.00[ASN][1000 genomes]
rs71574648	1.00[ASN][1000 genomes]
rs71574649	1.00[ASN][1000 genomes]
rs72991903	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72991923	1.00[ASN][1000 genomes]
rs72993984	1.00[ASN][1000 genomes]
rs72993996	1.00[ASN][1000 genomes]
rs7747163	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs9493599	0.80[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv886678	chr6:133550279-133631190	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886679	chr6:133578733-133635272	Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133594200-133607000	Weak transcription	Hela-S3	cervix
2	chr6:133594200-133612800	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:133594200-133614000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:133594200-133617200	Weak transcription	Left Ventricle	heart
5	chr6:133599000-133610400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:133599000-133629000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:133599800-133612400	Weak transcription	A549	lung
8	chr6:133600000-133606400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:133603800-133604000	Enhancers	Psoas Muscle	Psoas
10	chr6:133603800-133604000	Enhancers	Skeletal Muscle Female	skeletal muscle

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