Variant report

Variant	rs7208758
Chromosome Location	chr17:46536610-46536611
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr17:46536448-46536674	GM12878	blood:	n/a	chr17:46536563-46536574
2	BATF	chr17:46536385-46536758	GM12878	blood:	n/a	chr17:46536563-46536574
3	ZEB1	chr17:46536596-46536945	GM12878	blood:	n/a	chr17:46536741-46536750
4	POU2F2	chr17:46536437-46536902	GM12891	blood:	n/a	chr17:46536710-46536723 chr17:46536449-46536462
5	RUNX3	chr17:46536384-46536806	GM12878	blood:	n/a	n/a
6	ATF2	chr17:46536330-46536849	GM12878	blood:	n/a	n/a
7	POU2F2	chr17:46536492-46536893	GM12891	blood:	n/a	chr17:46536710-46536723
8	RUNX3	chr17:46536386-46536875	GM12878	blood:	n/a	n/a
9	POU2F2	chr17:46536598-46536751	GM12878	blood:	n/a	chr17:46536710-46536723
10	POU2F2	chr17:46536449-46536944	GM12878	blood:	n/a	chr17:46536710-46536723 chr17:46536449-46536462

Variant related genes	Relation type
ENSG00000264451	TF binding region

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1027894	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079819	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079820	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1110921	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11649749	1.00[CEU][hapmap]
rs11650663	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11654288	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655120	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655137	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11656589	1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12449743	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12449855	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12451731	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452277	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452566	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452848	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12453784	1.00[ASN][1000 genomes]
rs16954446	1.00[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1973576	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28413063	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28436607	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28577013	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28613168	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35772538	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4132677	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56727666	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57559912	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59042469	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504259	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207949	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7208499	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7212398	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7213936	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7214922	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215843	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7217664	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7219155	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7221156	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222296	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222830	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7224936	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7225940	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7226288	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8065457	0.80[EUR][1000 genomes]
rs8069796	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8070322	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8071222	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8073065	1.00[CEU][hapmap]
rs8073671	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8073979	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079940	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8081430	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8082050	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9747388	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9891857	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9895449	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9897131	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9902082	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9904494	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9906587	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9908329	1.00[JPT][hapmap]
rs9909089	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9910351	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911663	1.00[ASN][1000 genomes]
rs9911712	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9914121	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9914154	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9915778	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916572	1.00[ASN][1000 genomes]
rs9916667	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46534800-46537000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr17:46535000-46537400	Enhancers	GM12878-XiMat	blood
3	chr17:46535000-46540800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr17:46535200-46540200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr17:46535200-46540200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr17:46535400-46540600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr17:46536600-46536800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
8	chr17:46536600-46536800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr17:46536600-46537000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr17:46536600-46537200	Enhancers	H9 Cell Line	embryonic stem cell

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