Variant report

Variant	rs56727666
Chromosome Location	chr17:46375508-46375509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46372838..46377462-chr17:46383835..46389128,6	K562	blood:
2	chr17:46373773..46376497-chr17:46380672..46383534,2	MCF-7	breast:
3	chr17:46374830..46377462-chr17:46386139..46388346,2	K562	blood:

Variant related genes	Relation type
ENSG00000235300	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1027894	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079819	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079820	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1110921	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11650663	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11654288	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655120	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655137	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11656589	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12449743	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12449855	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12449905	1.00[ASN][1000 genomes]
rs12451731	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452277	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452566	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452848	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12453784	1.00[ASN][1000 genomes]
rs16954446	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1973576	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28413063	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28436607	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28577013	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28613168	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35772538	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4132677	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57559912	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59042469	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504259	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207949	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7208499	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7208758	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7212398	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7213936	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7214922	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7217664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7219155	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7221156	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222296	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222830	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7224936	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7225940	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7226288	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8065457	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8069796	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8070322	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8071222	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8073671	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8073979	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079940	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8081430	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8082050	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9747388	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9891857	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9895449	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9897131	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9902082	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9904494	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9906587	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9909089	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9910351	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911663	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911712	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9914121	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9914154	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9915778	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916572	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916667	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46372800-46377400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr17:46372800-46378400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr17:46373200-46375800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr17:46373200-46376400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr17:46373200-46376800	Enhancers	GM12878-XiMat	blood
6	chr17:46373200-46378200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr17:46373200-46378600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr17:46373200-46415000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr17:46373600-46375800	Enhancers	Fetal Intestine Small	intestine
10	chr17:46373600-46377200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr17:46373600-46388400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr17:46374200-46376400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr17:46374600-46376200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr17:46375000-46375600	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr17:46375000-46376200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr17:46375000-46376600	Enhancers	Primary T cells from cord blood	blood
17	chr17:46375000-46378400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr17:46375200-46375600	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr17:46375200-46375800	Enhancers	Primary T cells fromperipheralblood	blood
20	chr17:46375400-46375800	Enhancers	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links