Variant report

Variant	rs7226288
Chromosome Location	chr17:46536220-46536221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46500936..46503842-chr17:46534803..46536418,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1027894	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079819	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079820	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1110921	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11650663	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11654288	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655120	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655137	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11656589	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12449743	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12449855	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12451731	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452277	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452566	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452848	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12453784	1.00[ASN][1000 genomes]
rs16954446	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1973576	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28413063	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28436607	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28577013	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28613168	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35772538	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4132677	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56727666	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57559912	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59042469	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504259	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207949	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7208499	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7208758	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7212398	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7213936	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7214922	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215843	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7217664	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7219155	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7221156	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222296	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222830	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7224936	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7225940	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8065457	0.80[EUR][1000 genomes]
rs8069796	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8070322	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8071222	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8073671	1.00[ASN][1000 genomes]
rs8073979	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079940	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8081430	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8082050	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9747388	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9891857	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9895449	0.89[EUR][1000 genomes]
rs9897131	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9902082	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9904494	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9906587	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9909089	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9910351	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911663	1.00[ASN][1000 genomes]
rs9911712	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9914121	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9914154	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9915778	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916572	1.00[ASN][1000 genomes]
rs9916667	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46534800-46537000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr17:46535000-46537400	Enhancers	GM12878-XiMat	blood
3	chr17:46535000-46540800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr17:46535200-46536400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr17:46535200-46540200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr17:46535200-46540200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr17:46535400-46540600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr17:46536000-46536600	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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