Variant report

Variant	rs7219155
Chromosome Location	chr17:46503083-46503084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46503026..46505286-chr17:46512719..46514914,2	K562	blood:
2	chr17:46500936..46503842-chr17:46534803..46536418,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1027894	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079819	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079820	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1110921	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11650663	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11654288	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655120	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655137	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11656589	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12449743	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12449855	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12451731	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452277	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452566	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452848	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12453784	1.00[ASN][1000 genomes]
rs16954446	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1973576	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28413063	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28436607	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28577013	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28613168	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35772538	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4132677	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56727666	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57559912	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59042469	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504259	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207949	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7208499	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7208758	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7212398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7213936	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7214922	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215843	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7217664	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7221156	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222296	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222830	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7224936	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7225940	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7226288	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8065457	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs8069796	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8070322	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8071222	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8073671	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8073979	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079940	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8081430	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8082050	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9747388	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9891857	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9895449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9897131	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9902082	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9904494	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9906587	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9909089	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9910351	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911663	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911712	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9914121	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9914154	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9915778	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916572	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916667	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46487800-46503600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr17:46489800-46505000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr17:46494600-46503600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr17:46498400-46503200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr17:46498600-46503600	Enhancers	Primary T cells from cord blood	blood
6	chr17:46499800-46503600	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr17:46500600-46503600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr17:46501600-46503600	Weak transcription	A549	lung
9	chr17:46502200-46503400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr17:46502200-46503800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr17:46502200-46505200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr17:46502200-46505200	Enhancers	Fetal Thymus	thymus
13	chr17:46502400-46503400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr17:46502600-46503400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr17:46502600-46503600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr17:46502800-46503600	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr17:46502800-46505000	Flanking Active TSS	GM12878-XiMat	blood
18	chr17:46503000-46503200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr17:46503000-46503200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr17:46503000-46503400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr17:46503000-46503600	Enhancers	K562	blood
22	chr17:46503000-46504400	Enhancers	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links