Variant report

Variant	rs28613168
Chromosome Location	chr17:46335409-46335410
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46331179..46335442-chr17:46341781..46344659,3	K562	blood:
2	chr17:46334050..46336909-chr17:46339101..46341476,2	K562	blood:
3	chr17:46297134..46298953-chr17:46333479..46335931,2	K562	blood:
4	chr17:46333899..46335510-chr17:46695937..46698252,2	K562	blood:
5	chr17:46312503..46315307-chr17:46333530..46335778,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1027894	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079819	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079820	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1110921	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11650663	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11654288	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655120	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655137	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11656589	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12449743	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12449855	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12449905	1.00[ASN][1000 genomes]
rs12451731	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452277	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452566	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452848	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12453784	1.00[ASN][1000 genomes]
rs16954446	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1973576	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28413063	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28436607	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28577013	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35772538	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4132677	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56727666	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57559912	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59042469	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504259	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207949	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7208499	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7208758	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7212398	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7213936	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7214922	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215843	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7217664	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7219155	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7221156	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222296	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222830	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7224936	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7225940	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7226288	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8065457	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8069796	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8070322	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8071222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8073671	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8073979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079940	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8081430	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8082050	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9747388	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9891857	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9895449	0.91[EUR][1000 genomes]
rs9897131	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9902082	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9904494	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9906587	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9909089	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9910351	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911663	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9914121	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9914154	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9915778	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916572	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916667	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46322600-46341800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr17:46322600-46342200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr17:46322800-46356200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr17:46324200-46355800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr17:46324200-46371600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr17:46324800-46337000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr17:46324800-46343000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr17:46326200-46335600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr17:46326200-46361200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr17:46329000-46337000	Weak transcription	HUVEC	blood vessel
13	chr17:46331600-46335600	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr17:46332600-46337000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr17:46332600-46337000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr17:46332600-46337000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr17:46333200-46338600	Enhancers	A549	lung
18	chr17:46333400-46336200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr17:46334200-46335600	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr17:46335000-46335600	Strong transcription	Primary T cells from cord blood	blood
21	chr17:46335000-46336600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr17:46335200-46337200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr17:46335400-46336000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr17:46335400-46336400	Enhancers	K562	blood
25	chr17:46335400-46337600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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