Variant report

Variant	rs9895449
Chromosome Location	chr17:46491517-46491518
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46491251..46493630-chr17:46497072..46499338,2	K562	blood:
2	chr17:46418218..46421137-chr17:46491015..46493380,2	MCF-7	breast:
3	chr17:46489594..46492117-chr17:46492121..46496114,3	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1027894	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11079819	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11079820	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1110921	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11650663	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11654288	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11655120	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11655137	0.91[EUR][1000 genomes]
rs11656589	0.91[EUR][1000 genomes]
rs12449743	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12449855	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12451731	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12452277	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12452566	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12452848	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs16954446	0.91[EUR][1000 genomes]
rs1973576	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28413063	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28436607	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28577013	0.91[EUR][1000 genomes]
rs28613168	0.91[EUR][1000 genomes]
rs35772538	0.91[EUR][1000 genomes]
rs4132677	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs56727666	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs57559912	0.89[EUR][1000 genomes]
rs59042469	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6504259	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7207949	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7208499	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7208758	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7212398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7213936	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7214922	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7215843	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7217664	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7219155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7221156	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7222296	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7222830	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7224936	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7225940	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7226288	0.89[EUR][1000 genomes]
rs8065457	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs8069796	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs8070322	0.91[EUR][1000 genomes]
rs8071222	0.91[EUR][1000 genomes]
rs8073671	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs8073979	0.91[EUR][1000 genomes]
rs8079940	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs8081430	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8082050	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9747388	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9891857	0.91[EUR][1000 genomes]
rs9897131	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9902082	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9904494	0.91[EUR][1000 genomes]
rs9906587	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9909089	0.91[EUR][1000 genomes]
rs9910351	0.91[EUR][1000 genomes]
rs9911663	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9911712	0.91[EUR][1000 genomes]
rs9914121	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9914154	0.91[EUR][1000 genomes]
rs9915778	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9916572	0.87[EUR][1000 genomes]
rs9916667	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46486800-46503000	Weak transcription	Thymus	Thymus
2	chr17:46487600-46501800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr17:46487800-46503600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr17:46488400-46491600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr17:46488800-46494200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr17:46488800-46494600	Enhancers	Primary B cells from peripheral blood	blood
7	chr17:46488800-46498800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr17:46488800-46499200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr17:46489000-46501800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr17:46489200-46498200	Enhancers	Primary T cells from cord blood	blood
11	chr17:46489200-46502200	Weak transcription	Fetal Thymus	thymus
12	chr17:46489800-46493200	Enhancers	Primary B cells from cord blood	blood
13	chr17:46489800-46497000	Enhancers	Primary T cells fromperipheralblood	blood
14	chr17:46489800-46505000	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr17:46490400-46495600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr17:46491000-46491800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr17:46491000-46491800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr17:46491200-46491600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr17:46491200-46491600	Flanking Active TSS	GM12878-XiMat	blood
20	chr17:46491200-46492000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr17:46491200-46492200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
22	chr17:46491400-46498000	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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