Variant report
Variant | rs7249567 |
---|---|
Chromosome Location | chr19:36406802-36406803 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:36396680..36400031-chr19:36406341..36409724,5 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000011600 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10221461 | 0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs10221486 | 0.92[CHB][hapmap];0.85[ASN][1000 genomes] |
rs11878880 | 0.85[ASN][1000 genomes] |
rs11879537 | 0.85[ASN][1000 genomes] |
rs11880835 | 0.84[ASN][1000 genomes] |
rs11880859 | 0.84[ASN][1000 genomes] |
rs11882386 | 0.92[CHB][hapmap];0.88[CHD][hapmap] |
rs11883234 | 0.83[ASN][1000 genomes] |
rs2293756 | 0.84[ASN][1000 genomes] |
rs55686886 | 0.84[ASN][1000 genomes] |
rs56042927 | 0.84[ASN][1000 genomes] |
rs56132631 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs56187901 | 0.84[ASN][1000 genomes] |
rs56230692 | 0.84[ASN][1000 genomes] |
rs57740310 | 0.97[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs57785375 | 1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs58768499 | 0.82[ASN][1000 genomes] |
rs59151712 | 0.84[ASN][1000 genomes] |
rs60276253 | 0.84[ASN][1000 genomes] |
rs60500471 | 0.84[ASN][1000 genomes] |
rs60697711 | 0.97[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs60892678 | 0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs61510077 | 0.83[ASN][1000 genomes] |
rs7245383 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.84[ASN][1000 genomes] |
rs7246541 | 0.92[CHB][hapmap];0.88[CHD][hapmap] |
rs7247000 | 0.92[CHB][hapmap] |
rs7247769 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.84[ASN][1000 genomes] |
rs7248253 | 0.84[ASN][1000 genomes] |
rs7248265 | 0.84[ASN][1000 genomes] |
rs7249502 | 0.84[ASN][1000 genomes] |
rs7251380 | 0.84[ASN][1000 genomes] |
rs7251422 | 0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs7252053 | 0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7252526 | 0.85[ASN][1000 genomes] |
rs7252572 | 0.82[ASN][1000 genomes] |
rs7252693 | 0.84[ASN][1000 genomes] |
rs7252839 | 0.84[ASN][1000 genomes] |
rs7254298 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs7254335 | 0.93[ASN][1000 genomes] |
rs7254905 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs7254994 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs7255824 | 0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs7256952 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.84[ASN][1000 genomes] |
rs7257789 | 0.92[CHB][hapmap];0.88[CHD][hapmap] |
rs7258914 | 0.92[CHB][hapmap] |
rs7259892 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs73599554 | 0.85[ASN][1000 genomes] |
rs73599565 | 0.85[ASN][1000 genomes] |
rs73928350 | 1.00[EUR][1000 genomes] |
rs73928352 | 1.00[EUR][1000 genomes] |
rs73928355 | 1.00[EUR][1000 genomes] |
rs73928364 | 0.85[ASN][1000 genomes] |
rs73928368 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs73928369 | 0.84[ASN][1000 genomes] |
rs909135 | 0.92[CHB][hapmap];0.88[CHD][hapmap] |
rs909136 | 0.92[CHB][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv432045 | chr19:35556260-36520760 | Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 191 gene(s) | inside rSNPs | diseases |
2 | nsv911638 | chr19:36265508-36537959 | Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
3 | esv3526489 | chr19:36306483-36741945 | Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 114 gene(s) | inside rSNPs | diseases |
4 | esv3526490 | chr19:36306483-36741945 | Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 114 gene(s) | inside rSNPs | diseases |
5 | esv1831737 | chr19:36324324-36690874 | Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 103 gene(s) | inside rSNPs | diseases |
6 | nsv833812 | chr19:36331913-36507594 | Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
7 | nsv833813 | chr19:36341181-36499431 | Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 47 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:36400800-36407600 | Enhancers | Primary monocytes fromperipheralblood | blood |
2 | chr19:36400800-36413400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
3 | chr19:36403000-36413400 | Weak transcription | Spleen | Spleen |
4 | chr19:36405000-36407000 | Enhancers | GM12878-XiMat | blood |
5 | chr19:36406000-36407800 | Enhancers | Primary neutrophils fromperipheralblood | blood |
6 | chr19:36406400-36407000 | Flanking Active TSS | Monocytes-CD14+_RO01746 | blood |