The 2.0 version of rSNPBase

Variant report

Variant rs11880859
Chromosome Location chr19:36437423-36437424
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:36429000-36438000 Weak transcription Osteobl bone
2 chr19:36429200-36438600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr19:36429400-36438000 Weak transcription ES-I3 Cell Line embryonic stem cell
4 chr19:36429400-36438000 Weak transcription Primary T killer naive cells fromperipheralblood blood
5 chr19:36429400-36440000 Weak transcription A549 lung
6 chr19:36429600-36438000 Strong transcription Fetal Stomach stomach
7 chr19:36429600-36439600 Weak transcription Fetal Lung lung
8 chr19:36429600-36444200 Weak transcription Rectal Mucosa Donor 29 rectum
9 chr19:36429800-36438000 Weak transcription Primary T helper cells PMA-I stimulated --
10 chr19:36429800-36438000 Weak transcription Colon Smooth Muscle Colon
11 chr19:36429800-36438400 Weak transcription Muscle Satellite Cultured Cells --
12 chr19:36429800-36438600 Weak transcription HUES64 Cell Line embryonic stem cell
13 chr19:36429800-36438600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr19:36429800-36441000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
15 chr19:36430000-36450000 Weak transcription Right Atrium heart
16 chr19:36430800-36438400 Strong transcription Breast Myoepithelial Primary Cells Breast
17 chr19:36431000-36438000 Weak transcription Primary T helper naive cells from peripheral blood blood
18 chr19:36431800-36437600 Weak transcription Left Ventricle heart
19 chr19:36431800-36437800 Weak transcription Primary T cells fromperipheralblood blood
20 chr19:36431800-36437800 Weak transcription Colonic Mucosa Colon
21 chr19:36431800-36438000 Weak transcription H1 Cell Line embryonic stem cell
22 chr19:36431800-36438000 Strong transcription Cortex derived primary cultured neurospheres brain
23 chr19:36431800-36438000 Weak transcription NHLF lung
24 chr19:36431800-36438200 Weak transcription Brain Angular Gyrus brain
25 chr19:36431800-36438600 Weak transcription Placenta Amnion Placenta Amnion
26 chr19:36431800-36440200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
27 chr19:36431800-36440400 Weak transcription H9 Cell Line embryonic stem cell
28 chr19:36431800-36442800 Weak transcription Thymus Thymus
29 chr19:36431800-36443000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr19:36432000-36438000 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr19:36432400-36437600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr19:36432400-36440200 Weak transcription iPS-15b Cell Line embryonic stem cell
33 chr19:36433400-36438000 Weak transcription Brain Substantia Nigra brain
34 chr19:36433600-36438000 Weak transcription Adipose Nuclei Adipose
35 chr19:36433600-36438200 Weak transcription Primary T helper cells fromperipheralblood blood
36 chr19:36433600-36438400 Weak transcription Primary T regulatory cells fromperipheralblood blood
37 chr19:36433600-36439200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr19:36433600-36444200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr19:36433800-36437800 Weak transcription Liver Liver
40 chr19:36434600-36437800 Strong transcription Skeletal Muscle Male skeletal muscle
41 chr19:36435200-36437800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
42 chr19:36435200-36440000 Weak transcription Fetal Muscle Leg muscle
43 chr19:36435400-36438000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
44 chr19:36435400-36438200 Weak transcription Primary T helper naive cells fromperipheralblood blood
45 chr19:36435400-36438400 Weak transcription Duodenum Smooth Muscle Duodenum
46 chr19:36435400-36438600 Weak transcription Brain Inferior Temporal Lobe brain
47 chr19:36435400-36438600 Weak transcription Duodenum Mucosa Duodenum
48 chr19:36435600-36437600 Strong transcription Fetal Brain Female brain
49 chr19:36435600-36438000 Strong transcription Brain Germinal Matrix brain
50 chr19:36435600-36441800 Weak transcription Brain Anterior Caudate brain

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Last update: Aug 31, 2015