The 2.0 version of rSNPBase

Variant report

Variant rs2242590
Chromosome Location chr19:36430465-36430466
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:36427800-36433000 Weak transcription Small Intestine intestine
2 chr19:36428200-36431800 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
3 chr19:36428800-36437000 Weak transcription HSMMtube muscle
4 chr19:36429000-36431600 Weak transcription Fetal Heart heart
5 chr19:36429000-36438000 Weak transcription Osteobl bone
6 chr19:36429200-36430600 Genic enhancers Esophagus oesophagus
7 chr19:36429200-36430600 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr19:36429200-36435000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
9 chr19:36429200-36437000 Weak transcription Psoas Muscle Psoas
10 chr19:36429200-36438600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr19:36429400-36430800 Weak transcription iPS-18 Cell Line embryonic stem cell
12 chr19:36429400-36430800 Genic enhancers Breast Myoepithelial Primary Cells Breast
13 chr19:36429400-36433000 Weak transcription Fetal Muscle Trunk muscle
14 chr19:36429400-36434800 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr19:36429400-36435400 Weak transcription Rectal Smooth Muscle rectum
16 chr19:36429400-36436200 Weak transcription Pancreatic Islets Pancreatic Islet
17 chr19:36429400-36438000 Weak transcription ES-I3 Cell Line embryonic stem cell
18 chr19:36429400-36438000 Weak transcription Primary T killer naive cells fromperipheralblood blood
19 chr19:36429400-36440000 Weak transcription A549 lung
20 chr19:36429600-36430600 Weak transcription HUES48 Cell Line embryonic stem cell
21 chr19:36429600-36430600 Genic enhancers Primary T helper naive cells fromperipheralblood blood
22 chr19:36429600-36430600 Weak transcription Duodenum Mucosa Duodenum
23 chr19:36429600-36431600 Strong transcription Primary T helper 17 cells PMA-I stimulated --
24 chr19:36429600-36433000 Weak transcription Primary T cells from cord blood blood
25 chr19:36429600-36433000 Weak transcription HepG2 liver
26 chr19:36429600-36433800 Strong transcription Fetal Muscle Leg muscle
27 chr19:36429600-36435400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr19:36429600-36436200 Weak transcription NHEK skin
29 chr19:36429600-36436600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
30 chr19:36429600-36438000 Strong transcription Fetal Stomach stomach
31 chr19:36429600-36439600 Weak transcription Fetal Lung lung
32 chr19:36429600-36444200 Weak transcription Rectal Mucosa Donor 29 rectum
33 chr19:36429800-36430600 Weak transcription H1 Cell Line embryonic stem cell
34 chr19:36429800-36430600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr19:36429800-36430600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
36 chr19:36429800-36430600 Weak transcription Primary T regulatory cells fromperipheralblood blood
37 chr19:36429800-36430600 Weak transcription Colonic Mucosa Colon
38 chr19:36429800-36430600 Weak transcription Skeletal Muscle Female skeletal muscle
39 chr19:36429800-36431600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr19:36429800-36431600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr19:36429800-36431600 Weak transcription Liver Liver
42 chr19:36429800-36431800 Strong transcription Fetal Intestine Small intestine
43 chr19:36429800-36432000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr19:36429800-36432000 Genic enhancers Adipose Nuclei Adipose
45 chr19:36429800-36432200 Strong transcription Stomach Smooth Muscle stomach
46 chr19:36429800-36432200 Weak transcription HMEC breast
47 chr19:36429800-36433000 Weak transcription Brain Anterior Caudate brain
48 chr19:36429800-36435000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
49 chr19:36429800-36438000 Weak transcription Primary T helper cells PMA-I stimulated --
50 chr19:36429800-36438000 Weak transcription Colon Smooth Muscle Colon

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Last update: Aug 31, 2015