Variant report

Variant	rs7251422
Chromosome Location	chr19:36416701-36416702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:36415212..36417969-chr19:36419526..36423356,3	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10221461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10221486	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1057265	0.84[ASN][1000 genomes]
rs11878444	0.85[ASN][1000 genomes]
rs11878880	0.93[ASN][1000 genomes]
rs11879537	0.93[ASN][1000 genomes]
rs11880835	0.92[ASN][1000 genomes]
rs11880859	0.92[ASN][1000 genomes]
rs11881157	0.84[ASN][1000 genomes]
rs11882386	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11883234	0.91[ASN][1000 genomes]
rs13382036	0.84[ASN][1000 genomes]
rs2242590	0.85[ASN][1000 genomes]
rs2293756	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs55686886	0.92[ASN][1000 genomes]
rs56042927	0.92[ASN][1000 genomes]
rs56132631	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56187901	0.92[ASN][1000 genomes]
rs56230692	0.92[ASN][1000 genomes]
rs56922307	0.87[ASN][1000 genomes]
rs57094555	0.87[ASN][1000 genomes]
rs57740310	0.90[AFR][1000 genomes]
rs57785375	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58161969	0.87[ASN][1000 genomes]
rs58456578	0.84[ASN][1000 genomes]
rs58768499	0.89[ASN][1000 genomes]
rs58976020	0.85[ASN][1000 genomes]
rs59150589	0.87[ASN][1000 genomes]
rs59151712	0.92[ASN][1000 genomes]
rs60073802	0.87[ASN][1000 genomes]
rs60276253	0.92[ASN][1000 genomes]
rs60500471	0.92[ASN][1000 genomes]
rs60697711	0.90[AFR][1000 genomes]
rs60892678	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61510077	0.91[ASN][1000 genomes]
rs7245383	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7246259	0.85[ASN][1000 genomes]
rs7246541	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7247000	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7247246	1.00[JPT][hapmap]
rs7247769	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7248253	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7248265	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7249502	0.92[ASN][1000 genomes]
rs7249567	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7251380	0.92[ASN][1000 genomes]
rs7252053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7252526	0.93[ASN][1000 genomes]
rs7252572	0.90[ASN][1000 genomes]
rs7252693	0.92[ASN][1000 genomes]
rs7252839	0.92[ASN][1000 genomes]
rs7254298	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7254335	0.85[ASN][1000 genomes]
rs7254905	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7254994	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7255824	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7256952	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7257789	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7257911	0.82[ASN][1000 genomes]
rs7258914	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7259892	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73599554	0.93[ASN][1000 genomes]
rs73599565	0.93[ASN][1000 genomes]
rs73599577	0.85[ASN][1000 genomes]
rs73599602	0.85[ASN][1000 genomes]
rs73928364	0.93[ASN][1000 genomes]
rs73928368	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73928369	0.92[ASN][1000 genomes]
rs909135	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs909136	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911638	chr19:36265508-36537959	Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
4	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
5	esv1831737	chr19:36324324-36690874	Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
6	nsv833812	chr19:36331913-36507594	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv833813	chr19:36341181-36499431	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7251422	LRFN3	cis	multi-tissue	Pritchard

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36414200-36421400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr19:36416400-36416800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr19:36416400-36417800	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links