Variant report

Variant	rs56132838
Chromosome Location	chr19:36424453-36424454
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10221486	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1057265	0.93[ASN][1000 genomes]
rs11878444	0.94[ASN][1000 genomes]
rs11878880	0.87[ASN][1000 genomes]
rs11879537	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11880835	0.87[ASN][1000 genomes]
rs11880859	0.87[ASN][1000 genomes]
rs11881157	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11882386	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11883234	0.85[ASN][1000 genomes]
rs13382036	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2242590	0.94[ASN][1000 genomes]
rs2293756	0.87[ASN][1000 genomes]
rs55686886	0.87[ASN][1000 genomes]
rs56042927	0.87[ASN][1000 genomes]
rs56187901	0.87[ASN][1000 genomes]
rs56230692	0.87[ASN][1000 genomes]
rs56922307	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57068163	0.87[EUR][1000 genomes]
rs57094555	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57785375	0.87[ASN][1000 genomes]
rs57962062	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs58161969	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58456578	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58504183	0.83[EUR][1000 genomes]
rs58551711	0.83[EUR][1000 genomes]
rs58768499	0.84[ASN][1000 genomes]
rs58976020	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59150589	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59151712	0.87[ASN][1000 genomes]
rs59416903	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs60073802	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60276253	0.87[ASN][1000 genomes]
rs60500471	0.87[ASN][1000 genomes]
rs60892678	0.87[ASN][1000 genomes]
rs60935148	0.83[EUR][1000 genomes]
rs61510077	0.83[ASN][1000 genomes]
rs61660311	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7245383	0.87[ASN][1000 genomes]
rs7246259	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7246541	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7247000	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7247769	0.87[ASN][1000 genomes]
rs7248253	0.87[ASN][1000 genomes]
rs7248265	0.87[ASN][1000 genomes]
rs7249502	0.87[ASN][1000 genomes]
rs7251380	0.87[ASN][1000 genomes]
rs7252526	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7252572	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7252693	0.87[ASN][1000 genomes]
rs7252839	0.87[ASN][1000 genomes]
rs7253086	0.83[EUR][1000 genomes]
rs7254298	0.87[ASN][1000 genomes]
rs7254335	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7254905	0.87[ASN][1000 genomes]
rs7254994	0.87[ASN][1000 genomes]
rs7255824	0.87[ASN][1000 genomes]
rs7256433	0.83[EUR][1000 genomes]
rs7256952	0.87[ASN][1000 genomes]
rs7257789	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7257911	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7258914	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7259892	0.87[ASN][1000 genomes]
rs73599539	0.87[EUR][1000 genomes]
rs73599540	0.87[EUR][1000 genomes]
rs73599546	0.87[EUR][1000 genomes]
rs73599554	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73599565	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73599577	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73599600	0.83[EUR][1000 genomes]
rs73599602	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73928364	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73928368	0.87[ASN][1000 genomes]
rs73928369	0.87[ASN][1000 genomes]
rs8110868	0.87[EUR][1000 genomes]
rs909135	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs909136	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911638	chr19:36265508-36537959	Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
4	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
5	esv1831737	chr19:36324324-36690874	Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
6	nsv833812	chr19:36331913-36507594	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv833813	chr19:36341181-36499431	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36422200-36426600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr19:36422400-36426000	Weak transcription	Fetal Intestine Large	intestine
3	chr19:36422400-36426000	Weak transcription	Osteobl	bone
4	chr19:36422400-36426200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr19:36422400-36426400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr19:36422400-36426400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr19:36422400-36426400	Weak transcription	Colonic Mucosa	Colon
8	chr19:36422400-36426400	Weak transcription	Fetal Lung	lung
9	chr19:36422400-36426400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr19:36422400-36426400	Weak transcription	NHDF-Ad	bronchial
11	chr19:36422400-36426600	Weak transcription	Liver	Liver
12	chr19:36422400-36426600	Weak transcription	Fetal Kidney	kidney
13	chr19:36422400-36426600	Weak transcription	HSMM	muscle
14	chr19:36422800-36426000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr19:36422800-36426200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr19:36423000-36425600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr19:36423000-36425800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr19:36423000-36426000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr19:36423000-36426000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr19:36423000-36426000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr19:36423000-36426000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr19:36423000-36426200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr19:36423000-36426200	Weak transcription	Left Ventricle	heart
24	chr19:36423000-36426400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr19:36423000-36426400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr19:36423000-36426400	Weak transcription	Adipose Nuclei	Adipose
27	chr19:36423000-36426400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr19:36423000-36426400	Weak transcription	Right Ventricle	heart
29	chr19:36423000-36426400	Weak transcription	NH-A	brain
30	chr19:36423000-36426600	Weak transcription	Right Atrium	heart
31	chr19:36423000-36426600	Weak transcription	Spleen	Spleen
32	chr19:36423000-36426600	Weak transcription	HSMMtube	muscle
33	chr19:36423200-36425600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr19:36423200-36425600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr19:36423200-36425800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr19:36423200-36425800	Weak transcription	Brain Germinal Matrix	brain
37	chr19:36423200-36426000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr19:36423200-36426000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr19:36423200-36426000	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr19:36423200-36426000	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr19:36423200-36426000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr19:36423200-36426000	Weak transcription	Fetal Brain Male	brain
43	chr19:36423200-36426000	Weak transcription	Fetal Intestine Small	intestine
44	chr19:36423200-36426000	Weak transcription	Fetal Muscle Leg	muscle
45	chr19:36423200-36426000	Weak transcription	Pancreas	Pancrea
46	chr19:36423200-36426000	Weak transcription	HepG2	liver
47	chr19:36423200-36426200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr19:36423200-36426200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr19:36423200-36426200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr19:36423200-36426200	Weak transcription	Fetal Stomach	stomach

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