Variant report

Variant	rs72710417
Chromosome Location	chr1:172585466-172585467
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr1:172585264-172585718	HL-60	blood:	n/a	n/a
2	SPI1	chr1:172585411-172585545	K562	blood:	n/a	n/a
3	SPI1	chr1:172585284-172586138	HL-60	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172567348..172569874-chr1:172585238..172587160,2	K562	blood:

Variant related genes	Relation type
RNU6-693P	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10157501	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10752995	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10911859	0.82[AMR][1000 genomes]
rs10911862	0.82[AMR][1000 genomes]
rs10911875	0.82[ASN][1000 genomes]
rs10911920	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10912009	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10912075	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1159378	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12021702	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12025433	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12038654	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12041837	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12070393	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12073872	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12093274	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12120798	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12123755	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12130435	0.82[AMR][1000 genomes]
rs2239816	0.82[AMR][1000 genomes]
rs2239817	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2285143	0.85[AMR][1000 genomes]
rs2285664	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2472549	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3738736	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3754426	0.94[AMR][1000 genomes]
rs3830150	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6424965	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7514814	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7519911	0.93[ASN][1000 genomes]
rs7532580	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7542003	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7553020	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9970543	0.93[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs72710417	SUCO	cis	lung	GTEx

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172566600-172595800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr1:172579800-172588600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:172580200-172589800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:172580800-172588800	Weak transcription	NH-A	brain
5	chr1:172581000-172585600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:172581000-172585800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr1:172581000-172586400	Weak transcription	Primary T cells from cord blood	blood
8	chr1:172581000-172589400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr1:172582000-172588600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:172584600-172586800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr1:172585200-172585600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:172585200-172585600	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr1:172585200-172585800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
14	chr1:172585200-172586400	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr1:172585400-172585600	ZNF genes & repeats	Aorta	Aorta
16	chr1:172585400-172585600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
17	chr1:172585400-172585800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:172585400-172586000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:172585400-172586000	Enhancers	Placenta	Placenta

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