Variant report

Variant	rs10911859
Chromosome Location	chr1:172495310-172495311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172439490..172443248-chr1:172495023..172498932,4	MCF-7	breast:
2	chr1:172492296..172496471-chr1:172500271..172503855,6	MCF-7	breast:
3	chr1:172427186..172429187-chr1:172494410..172497068,2	K562	blood:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10157501	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10752995	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10911830	0.88[ASN][1000 genomes]
rs10911833	0.87[ASN][1000 genomes]
rs10911843	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10911862	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911875	0.94[ASN][1000 genomes]
rs10911920	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10912009	0.91[AMR][1000 genomes]
rs10912075	0.81[AMR][1000 genomes]
rs1159378	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11799659	0.85[ASN][1000 genomes]
rs12021702	0.82[AMR][1000 genomes]
rs12025433	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12038654	0.80[AMR][1000 genomes]
rs12041837	0.93[AMR][1000 genomes]
rs12070393	0.84[AMR][1000 genomes]
rs12073872	0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12093274	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12118647	0.86[ASN][1000 genomes]
rs12120798	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12130435	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12145007	0.86[ASN][1000 genomes]
rs2239816	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2239817	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2285143	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2285664	0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2472549	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3738736	0.82[AMR][1000 genomes]
rs3754426	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56410307	0.83[ASN][1000 genomes]
rs6424954	0.87[ASN][1000 genomes]
rs6424955	0.88[ASN][1000 genomes]
rs6424956	0.87[ASN][1000 genomes]
rs6424965	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6657023	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6679222	0.87[ASN][1000 genomes]
rs6688929	0.88[ASN][1000 genomes]
rs6691320	0.87[ASN][1000 genomes]
rs6691528	0.87[ASN][1000 genomes]
rs6694111	0.87[ASN][1000 genomes]
rs6697618	0.87[ASN][1000 genomes]
rs6698031	0.87[ASN][1000 genomes]
rs6699802	0.87[ASN][1000 genomes]
rs6702420	0.87[ASN][1000 genomes]
rs72710417	0.82[AMR][1000 genomes]
rs7514814	0.80[AMR][1000 genomes]
rs7517856	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7532580	0.80[AMR][1000 genomes]
rs7542003	0.81[AMR][1000 genomes]
rs7553020	0.94[AMR][1000 genomes]
rs9943237	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10911859	SUCO	cis	lung	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172487800-172499000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:172492600-172499000	Weak transcription	K562	blood
3	chr1:172494800-172495600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:172494800-172495600	Weak transcription	Fetal Intestine Small	intestine

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