The 2.0 version of rSNPBase

Variant report

Variant rs7553020
Chromosome Location chr1:172570550-172570551
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172519400-172571600 Weak transcription Brain Angular Gyrus brain
2 chr1:172540200-172581000 Weak transcription Colonic Mucosa Colon
3 chr1:172557400-172581200 Weak transcription Fetal Heart heart
4 chr1:172557600-172574600 Weak transcription Stomach Mucosa stomach
5 chr1:172559000-172583400 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr1:172559400-172571600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr1:172559800-172573400 Weak transcription Fetal Brain Male brain
8 chr1:172560000-172578400 Weak transcription HSMMtube muscle
9 chr1:172560000-172580600 Weak transcription Small Intestine intestine
10 chr1:172560000-172581200 Weak transcription Psoas Muscle Psoas
11 chr1:172560000-172582400 Weak transcription Brain Substantia Nigra brain
12 chr1:172560200-172574200 Weak transcription HUVEC blood vessel
13 chr1:172560200-172581800 Weak transcription Hela-S3 cervix
14 chr1:172560400-172571400 Weak transcription Brain Cingulate Gyrus brain
15 chr1:172560400-172572800 Weak transcription Brain Inferior Temporal Lobe brain
16 chr1:172563600-172574400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr1:172563600-172574800 Strong transcription Primary B cells from peripheral blood blood
18 chr1:172563800-172581200 Strong transcription Primary B cells from cord blood blood
19 chr1:172563800-172582000 Strong transcription Monocytes-CD14+_RO01746 blood
20 chr1:172564400-172581000 Strong transcription Primary neutrophils fromperipheralblood blood
21 chr1:172564400-172582000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
22 chr1:172564600-172579200 Weak transcription Fetal Kidney kidney
23 chr1:172564800-172571600 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr1:172565200-172573400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr1:172565400-172572000 Strong transcription Fetal Lung lung
26 chr1:172565400-172573000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr1:172565400-172574000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr1:172566000-172573600 Weak transcription Brain Anterior Caudate brain
29 chr1:172566000-172574800 Strong transcription Primary T helper cells PMA-I stimulated --
30 chr1:172566000-172581200 Strong transcription Primary monocytes fromperipheralblood blood
31 chr1:172566200-172575000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr1:172566400-172573200 Weak transcription Brain Hippocampus Middle brain
33 chr1:172566400-172573600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
34 chr1:172566400-172573800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
35 chr1:172566400-172575000 Strong transcription Breast Myoepithelial Primary Cells Breast
36 chr1:172566400-172575000 Strong transcription Primary T helper cells fromperipheralblood blood
37 chr1:172566400-172576800 Strong transcription Primary T cells fromperipheralblood blood
38 chr1:172566600-172571000 Strong transcription Fetal Intestine Large intestine
39 chr1:172566600-172571200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
40 chr1:172566600-172572200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr1:172566600-172573200 Weak transcription Pancreatic Islets Pancreatic Islet
42 chr1:172566600-172574000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr1:172566600-172575000 Strong transcription Primary T regulatory cells fromperipheralblood blood
44 chr1:172566600-172575000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr1:172566600-172581000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr1:172566600-172581000 Weak transcription H9 Cell Line embryonic stem cell
47 chr1:172566600-172581200 Weak transcription Fetal Stomach stomach
48 chr1:172566600-172581800 Weak transcription Esophagus oesophagus
49 chr1:172566600-172582200 Weak transcription Fetal Intestine Small intestine
50 chr1:172566600-172595800 Weak transcription Primary T helper naive cells from peripheral blood blood

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Last update: Aug 31, 2015