Variant report

Variant	rs7514814
Chromosome Location	chr1:172573002-172573003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172502370..172504490-chr1:172572998..172575302,2	K562	blood:
2	chr1:172569248..172571296-chr1:172571890..172573476,2	K562	blood:
3	chr1:172571108..172573486-chr1:172574030..172577529,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10157501	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10752995	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10911830	0.88[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap]
rs10911833	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs10911843	0.91[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap]
rs10911859	0.80[AMR][1000 genomes]
rs10911862	0.91[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes]
rs10911875	0.81[ASN][1000 genomes]
rs10911920	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10912009	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10912075	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1159378	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12021702	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12025433	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12038654	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12041837	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12070393	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12073872	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12093274	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12120798	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12123755	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12130435	0.80[AMR][1000 genomes]
rs12145007	0.81[CHB][hapmap]
rs2239816	0.91[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.80[AMR][1000 genomes]
rs2239817	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2285143	0.80[AMR][1000 genomes]
rs2285664	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2472549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3738736	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3754426	0.91[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes]
rs3830150	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6424955	0.88[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap]
rs6424956	0.81[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap]
rs6424965	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6679222	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs6688929	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6691320	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs6691528	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs6699802	0.82[JPT][hapmap]
rs6702420	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs72710417	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7519911	0.92[ASN][1000 genomes]
rs7532580	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7542003	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7553020	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9943237	0.91[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];0.83[TSI][hapmap]
rs9970543	0.92[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7514814	SUCO	cis	lung	GTEx
rs7514814	FMO1	cis	parietal	SCAN
rs7514814	FMO2	cis	cerebellum	SCAN

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172540200-172581000	Weak transcription	Colonic Mucosa	Colon
2	chr1:172557400-172581200	Weak transcription	Fetal Heart	heart
3	chr1:172557600-172574600	Weak transcription	Stomach Mucosa	stomach
4	chr1:172559000-172583400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:172559800-172573400	Weak transcription	Fetal Brain Male	brain
6	chr1:172560000-172578400	Weak transcription	HSMMtube	muscle
7	chr1:172560000-172580600	Weak transcription	Small Intestine	intestine
8	chr1:172560000-172581200	Weak transcription	Psoas Muscle	Psoas
9	chr1:172560000-172582400	Weak transcription	Brain Substantia Nigra	brain
10	chr1:172560200-172574200	Weak transcription	HUVEC	blood vessel
11	chr1:172560200-172581800	Weak transcription	Hela-S3	cervix
12	chr1:172563600-172574400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:172563600-172574800	Strong transcription	Primary B cells from peripheral blood	blood
14	chr1:172563800-172581200	Strong transcription	Primary B cells from cord blood	blood
15	chr1:172563800-172582000	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr1:172564400-172581000	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr1:172564400-172582000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr1:172564600-172579200	Weak transcription	Fetal Kidney	kidney
19	chr1:172565200-172573400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr1:172565400-172574000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:172566000-172573600	Weak transcription	Brain Anterior Caudate	brain
22	chr1:172566000-172574800	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr1:172566000-172581200	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr1:172566200-172575000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:172566400-172573200	Weak transcription	Brain Hippocampus Middle	brain
26	chr1:172566400-172573600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr1:172566400-172573800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr1:172566400-172575000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr1:172566400-172575000	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr1:172566400-172576800	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr1:172566600-172573200	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr1:172566600-172574000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr1:172566600-172575000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr1:172566600-172575000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr1:172566600-172581000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr1:172566600-172581000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr1:172566600-172581200	Weak transcription	Fetal Stomach	stomach
38	chr1:172566600-172581800	Weak transcription	Esophagus	oesophagus
39	chr1:172566600-172582200	Weak transcription	Fetal Intestine Small	intestine
40	chr1:172566600-172595800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr1:172566800-172573400	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr1:172566800-172579200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr1:172567000-172575000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr1:172567000-172578200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr1:172567000-172579000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr1:172567000-172580600	Weak transcription	Right Ventricle	heart
47	chr1:172567000-172580800	Weak transcription	Ovary	ovary
48	chr1:172567200-172579000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr1:172567200-172579000	Weak transcription	NHLF	lung
50	chr1:172567200-172581400	Weak transcription	A549	lung

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