Variant report

Variant	rs6679222
Chromosome Location	chr1:172467656-172467657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:172444481..172448040-chr1:172465983..172470352,4	MCF-7	breast:
2	chr1:172443498..172448130-chr1:172464565..172470217,6	MCF-7	breast:
3	chr1:172466607..172473945-chr1:172474467..172485611,18	MCF-7	breast:
4	chr1:172464666..172471866-chr1:172497727..172502912,19	MCF-7	breast:
5	chr1:172460626..172462699-chr1:172466719..172469115,2	K562	blood:
6	chr1:172458357..172459960-chr1:172467256..172468766,2	MCF-7	breast:
7	chr1:172464396..172473941-chr1:172479690..172484856,11	MCF-7	breast:
8	chr1:172451102..172453458-chr1:172467272..172470611,3	MCF-7	breast:
9	chr1:172416555..172419141-chr1:172466431..172468171,3	MCF-7	breast:
10	chr1:172464975..172470841-chr1:172497747..172503666,11	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10157501	0.82[ASN][1000 genomes]
rs10911830	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10911833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911843	0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10911859	0.87[ASN][1000 genomes]
rs10911862	0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10911875	0.82[ASN][1000 genomes]
rs10911920	0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1159378	0.82[ASN][1000 genomes]
rs11799659	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12025433	0.82[ASN][1000 genomes]
rs12073872	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs12093274	0.82[ASN][1000 genomes]
rs12118647	0.99[ASN][1000 genomes]
rs12120798	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs12130435	0.86[ASN][1000 genomes]
rs12145007	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2239816	0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2239817	0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2285143	0.84[ASN][1000 genomes]
rs2472549	0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3754426	0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs56410307	0.95[ASN][1000 genomes]
rs6424954	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6424955	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6424956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6424965	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6657023	0.99[ASN][1000 genomes]
rs6688929	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.99[ASN][1000 genomes]
rs6691320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6694111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6697618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6698031	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6699802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6702420	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7514814	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs7517856	0.86[ASN][1000 genomes]
rs7532580	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs9943237	0.87[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172464800-172471000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr1:172465000-172467800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:172465000-172468600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:172465600-172470000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:172465800-172470800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr1:172466000-172470000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:172466200-172470800	Weak transcription	Esophagus	oesophagus
8	chr1:172466600-172468800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:172466800-172468000	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:172466800-172468200	Weak transcription	Fetal Intestine Large	intestine
11	chr1:172466800-172468600	Weak transcription	Fetal Intestine Small	intestine
12	chr1:172466800-172468800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr1:172466800-172468800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:172466800-172468800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:172466800-172468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:172466800-172468800	Weak transcription	Fetal Lung	lung
17	chr1:172466800-172468800	Weak transcription	Placenta	Placenta
18	chr1:172466800-172468800	Weak transcription	Pancreas	Pancrea
19	chr1:172466800-172468800	Weak transcription	HMEC	breast
20	chr1:172466800-172468800	Weak transcription	K562	blood
21	chr1:172466800-172469400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr1:172466800-172476400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr1:172466800-172477200	Weak transcription	Left Ventricle	heart
24	chr1:172467000-172467800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr1:172467000-172468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:172467200-172467800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr1:172467200-172468200	Weak transcription	Hela-S3	cervix
28	chr1:172467200-172468800	Weak transcription	NHEK	skin
29	chr1:172467400-172468400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr1:172467400-172468800	Enhancers	HepG2	liver

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