Variant report

Variant	rs10911830
Chromosome Location	chr1:172467044-172467045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:172444481..172448040-chr1:172465983..172470352,4	MCF-7	breast:
2	chr1:172443498..172448130-chr1:172464565..172470217,6	MCF-7	breast:
3	chr1:172466607..172473945-chr1:172474467..172485611,18	MCF-7	breast:
4	chr1:172464666..172471866-chr1:172497727..172502912,19	MCF-7	breast:
5	chr1:172460626..172462699-chr1:172466719..172469115,2	K562	blood:
6	chr1:172464396..172473941-chr1:172479690..172484856,11	MCF-7	breast:
7	chr1:172416555..172419141-chr1:172466431..172468171,3	MCF-7	breast:
8	chr1:172464975..172470841-chr1:172497747..172503666,11	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10157501	0.83[ASN][1000 genomes]
rs10911833	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10911843	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10911859	0.88[ASN][1000 genomes]
rs10911862	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10911875	0.83[ASN][1000 genomes]
rs10911920	0.88[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1159378	0.83[ASN][1000 genomes]
rs11799659	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12025433	0.83[ASN][1000 genomes]
rs12073872	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs12093274	0.83[ASN][1000 genomes]
rs12118647	0.98[ASN][1000 genomes]
rs12120798	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs12130435	0.87[ASN][1000 genomes]
rs12145007	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2239816	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2239817	0.88[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2285143	0.85[ASN][1000 genomes]
rs2472549	0.88[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3754426	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs56410307	0.94[ASN][1000 genomes]
rs6424954	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6424955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6424956	0.94[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.89[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6424965	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6657023	1.00[ASN][1000 genomes]
rs6679222	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6688929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691320	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6691528	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6694111	0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6697618	0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6698031	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6699802	0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.99[ASN][1000 genomes]
rs6702420	0.93[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.99[ASN][1000 genomes]
rs7514814	0.88[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap]
rs7517856	0.87[ASN][1000 genomes]
rs7532580	0.88[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs9943237	0.93[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10911830	SNORD44	cis	parietal	SCAN
rs10911830	FMO2	cis	cerebellum	SCAN

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172464800-172467200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:172464800-172471000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr1:172465000-172467800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:172465000-172468600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:172465600-172470000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:172465800-172467200	Enhancers	Hela-S3	cervix
7	chr1:172465800-172470800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr1:172466000-172467200	Enhancers	NHEK	skin
9	chr1:172466000-172467400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:172466000-172470000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:172466200-172467200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:172466200-172467600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:172466200-172470800	Weak transcription	Esophagus	oesophagus
14	chr1:172466400-172467200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr1:172466600-172468800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:172466800-172467400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr1:172466800-172468000	Weak transcription	Fetal Muscle Leg	muscle
18	chr1:172466800-172468200	Weak transcription	Fetal Intestine Large	intestine
19	chr1:172466800-172468600	Weak transcription	Fetal Intestine Small	intestine
20	chr1:172466800-172468800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:172466800-172468800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr1:172466800-172468800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr1:172466800-172468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:172466800-172468800	Weak transcription	Fetal Lung	lung
25	chr1:172466800-172468800	Weak transcription	Placenta	Placenta
26	chr1:172466800-172468800	Weak transcription	Pancreas	Pancrea
27	chr1:172466800-172468800	Weak transcription	HMEC	breast
28	chr1:172466800-172468800	Weak transcription	K562	blood
29	chr1:172466800-172469400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr1:172466800-172476400	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr1:172466800-172477200	Weak transcription	Left Ventricle	heart
32	chr1:172467000-172467400	Weak transcription	HepG2	liver
33	chr1:172467000-172467800	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr1:172467000-172468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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