Variant report

Variant	rs6657023
Chromosome Location	chr1:172471988-172471989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172468358..172470572-chr1:172471626..172474373,2	MCF-7	breast:
2	chr1:172466607..172473945-chr1:172474467..172485611,18	MCF-7	breast:
3	chr1:172464396..172473941-chr1:172479690..172484856,11	MCF-7	breast:
4	chr1:172471627..172474558-chr1:172496205..172498413,2	MCF-7	breast:
5	chr1:172471460..172472974-chr1:172476263..172478688,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10157501	0.83[ASN][1000 genomes]
rs10911830	1.00[ASN][1000 genomes]
rs10911833	0.99[ASN][1000 genomes]
rs10911843	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10911859	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10911862	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10911875	0.83[ASN][1000 genomes]
rs10911920	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1159378	0.83[ASN][1000 genomes]
rs11799659	0.96[ASN][1000 genomes]
rs12025433	0.83[ASN][1000 genomes]
rs12093274	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12118647	0.98[ASN][1000 genomes]
rs12130435	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12145007	0.98[ASN][1000 genomes]
rs2239816	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2239817	0.83[ASN][1000 genomes]
rs2285143	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2472549	0.83[ASN][1000 genomes]
rs3754426	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56410307	0.94[ASN][1000 genomes]
rs6424954	0.99[ASN][1000 genomes]
rs6424955	1.00[ASN][1000 genomes]
rs6424956	0.99[ASN][1000 genomes]
rs6424965	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6679222	0.99[ASN][1000 genomes]
rs6688929	1.00[ASN][1000 genomes]
rs6691320	0.99[ASN][1000 genomes]
rs6691528	0.99[ASN][1000 genomes]
rs6694111	0.99[ASN][1000 genomes]
rs6697618	0.99[ASN][1000 genomes]
rs6698031	0.99[ASN][1000 genomes]
rs6699802	0.99[ASN][1000 genomes]
rs6702420	0.99[ASN][1000 genomes]
rs7517856	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9943237	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6657023	SUCO	cis	lung	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172466800-172476400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:172466800-172477200	Weak transcription	Left Ventricle	heart
3	chr1:172469600-172472000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:172470000-172473800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr1:172470800-172479200	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links