Variant report

Variant	rs10157501
Chromosome Location	chr1:172536034-172536035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172533299..172534999-chr1:172535109..172538092,2	K562	blood:
2	chr1:172530178..172532792-chr1:172534437..172536976,3	K562	blood:
3	chr1:172530178..172532826-chr1:172534437..172536976,3	K562	blood:
4	chr1:172527755..172529471-chr1:172533973..172536807,2	K562	blood:
5	chr1:172520454..172524675-chr1:172533729..172536639,3	K562	blood:
6	chr1:172503248..172504952-chr1:172533651..172536311,2	K562	blood:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10752995	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10911830	0.83[ASN][1000 genomes]
rs10911833	0.82[ASN][1000 genomes]
rs10911843	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10911859	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10911862	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10911875	1.00[ASN][1000 genomes]
rs10911920	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912009	0.87[EUR][1000 genomes]
rs10912075	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1159378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12021702	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12025433	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12038654	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12041837	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12070393	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12073872	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12093274	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118647	0.81[ASN][1000 genomes]
rs12120798	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12123755	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12130435	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12145007	0.81[ASN][1000 genomes]
rs2239816	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2239817	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2285143	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2285664	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2472549	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3738736	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3754426	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3830150	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6424954	0.82[ASN][1000 genomes]
rs6424955	0.83[ASN][1000 genomes]
rs6424956	0.82[ASN][1000 genomes]
rs6424965	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6657023	0.83[ASN][1000 genomes]
rs6679222	0.82[ASN][1000 genomes]
rs6688929	0.83[ASN][1000 genomes]
rs6691320	0.82[ASN][1000 genomes]
rs6691528	0.82[ASN][1000 genomes]
rs6694111	0.82[ASN][1000 genomes]
rs6697618	0.82[ASN][1000 genomes]
rs6698031	0.82[ASN][1000 genomes]
rs6699802	0.82[ASN][1000 genomes]
rs6702420	0.82[ASN][1000 genomes]
rs72710417	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7514814	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7517856	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7519911	0.80[ASN][1000 genomes]
rs7532580	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7542003	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7553020	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9943237	0.83[ASN][1000 genomes]
rs9970543	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872547	chr1:172511969-172545832	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv872548	chr1:172518012-172551724	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10157501	SUCO	cis	lung	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172511800-172557800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:172514200-172558800	Weak transcription	Small Intestine	intestine
3	chr1:172516800-172550200	Weak transcription	Fetal Heart	heart
4	chr1:172519200-172559000	Weak transcription	Psoas Muscle	Psoas
5	chr1:172519400-172571600	Weak transcription	Brain Angular Gyrus	brain
6	chr1:172519600-172538000	Weak transcription	Hela-S3	cervix
7	chr1:172519800-172539200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr1:172521800-172539800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr1:172521800-172540400	Strong transcription	Primary B cells from cord blood	blood
10	chr1:172521800-172560400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:172523400-172536200	Strong transcription	Primary hematopoietic stem cells	blood
12	chr1:172524000-172538200	Strong transcription	Dnd41	blood
13	chr1:172524000-172538400	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr1:172524000-172540400	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr1:172524200-172537400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr1:172524200-172539600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr1:172524200-172539600	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr1:172524400-172539000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr1:172524400-172540000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr1:172524600-172539800	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr1:172524800-172540400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr1:172525000-172540400	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr1:172525200-172537000	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr1:172526200-172540400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:172526400-172536200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:172526800-172537000	Weak transcription	Fetal Brain Male	brain
27	chr1:172527000-172539600	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr1:172527000-172558000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr1:172527200-172540000	Weak transcription	Colonic Mucosa	Colon
30	chr1:172527800-172536800	Weak transcription	HMEC	breast
31	chr1:172527800-172550400	Weak transcription	Stomach Mucosa	stomach
32	chr1:172527800-172554600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr1:172528000-172537400	Strong transcription	Primary T cells from cord blood	blood
34	chr1:172528400-172539400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr1:172528400-172543000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr1:172528400-172547800	Weak transcription	A549	lung
37	chr1:172528600-172539200	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr1:172528800-172537400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr1:172529000-172538400	Weak transcription	NHDF-Ad	bronchial
40	chr1:172529200-172539800	Weak transcription	NHLF	lung
41	chr1:172529600-172536600	Weak transcription	Liver	Liver
42	chr1:172529800-172540000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr1:172530800-172536200	Strong transcription	Lung	lung
44	chr1:172531000-172536400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr1:172531000-172538600	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr1:172531200-172538400	Weak transcription	Osteobl	bone
47	chr1:172531800-172540400	Strong transcription	Duodenum Mucosa	Duodenum
48	chr1:172532000-172539600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr1:172532200-172538600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr1:172532800-172540400	Strong transcription	Placenta	Placenta

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