Variant report

Variant	rs9943237
Chromosome Location	chr1:172474017-172474018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172468358..172470572-chr1:172471626..172474373,2	MCF-7	breast:
2	chr1:172468168..172471108-chr1:172473106..172474837,2	K562	blood:
3	chr1:172472207..172475097-chr1:172476756..172478473,2	K562	blood:
4	chr1:172472631..172474136-chr1:172499520..172501822,2	MCF-7	breast:
5	chr1:172471627..172474558-chr1:172496205..172498413,2	MCF-7	breast:
6	chr1:172463775..172466604-chr1:172473062..172475753,2	K562	blood:
7	chr1:172473168..172475053-chr1:172476181..172478797,2	K562	blood:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10157501	0.83[ASN][1000 genomes]
rs10911830	0.93[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10911833	0.87[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10911843	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10911859	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10911862	0.92[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10911875	0.83[ASN][1000 genomes]
rs10911920	0.83[ASW][hapmap];0.91[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.83[TSI][hapmap];0.94[YRI][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1159378	0.83[ASN][1000 genomes]
rs11799659	0.96[ASN][1000 genomes]
rs12025433	0.83[ASN][1000 genomes]
rs12073872	0.87[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.88[YRI][hapmap]
rs12093274	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12118647	0.98[ASN][1000 genomes]
rs12120798	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs12130435	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12145007	0.87[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2239816	0.83[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2239817	0.91[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.83[TSI][hapmap];0.83[ASN][1000 genomes]
rs2285143	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2472549	0.91[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[ASN][1000 genomes]
rs3754426	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56410307	0.94[ASN][1000 genomes]
rs6424954	0.99[ASN][1000 genomes]
rs6424955	0.83[ASW][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6424956	0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6424965	0.91[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6657023	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6679222	0.87[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6688929	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6691320	0.87[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6691528	0.87[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6694111	0.99[ASN][1000 genomes]
rs6697618	0.99[ASN][1000 genomes]
rs6698031	0.99[ASN][1000 genomes]
rs6699802	0.86[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6702420	0.87[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs7514814	0.91[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];0.83[TSI][hapmap]
rs7517856	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7532580	0.91[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.83[TSI][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs9943237	FMO1	cis	parietal	SCAN
rs9943237	FMO2	cis	cerebellum	SCAN
rs9943237	MAEL	cis	cerebellum	SCAN
rs9943237	SUCO	cis	lung	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172466800-172476400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:172466800-172477200	Weak transcription	Left Ventricle	heart
3	chr1:172470800-172479200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr1:172473800-172474200	Enhancers	Primary monocytes fromperipheralblood	blood

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