Variant report

Variant	rs56410307
Chromosome Location	chr1:172466731-172466732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:172444481..172448040-chr1:172465983..172470352,4	MCF-7	breast:
2	chr1:172443498..172448130-chr1:172464565..172470217,6	MCF-7	breast:
3	chr1:172466607..172473945-chr1:172474467..172485611,18	MCF-7	breast:
4	chr1:172464666..172471866-chr1:172497727..172502912,19	MCF-7	breast:
5	chr1:172460626..172462699-chr1:172466719..172469115,2	K562	blood:
6	chr1:172464396..172473941-chr1:172479690..172484856,11	MCF-7	breast:
7	chr1:172452518..172456235-chr1:172461776..172466798,6	MCF-7	breast:
8	chr1:172416555..172419141-chr1:172466431..172468171,3	MCF-7	breast:
9	chr1:172464975..172470841-chr1:172497747..172503666,11	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

rs_ID	r²[population]
rs10911830	0.94[ASN][1000 genomes]
rs10911833	0.95[ASN][1000 genomes]
rs10911843	0.84[ASN][1000 genomes]
rs10911859	0.83[ASN][1000 genomes]
rs10911862	0.81[ASN][1000 genomes]
rs11799659	0.93[ASN][1000 genomes]
rs12118647	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12130435	0.81[ASN][1000 genomes]
rs12145007	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2239816	0.81[ASN][1000 genomes]
rs3754426	0.81[ASN][1000 genomes]
rs6424954	0.95[ASN][1000 genomes]
rs6424955	0.94[ASN][1000 genomes]
rs6424956	0.95[ASN][1000 genomes]
rs6657023	0.94[ASN][1000 genomes]
rs6679222	0.95[ASN][1000 genomes]
rs6688929	0.94[ASN][1000 genomes]
rs6691320	0.95[ASN][1000 genomes]
rs6691528	0.95[ASN][1000 genomes]
rs6694111	0.95[ASN][1000 genomes]
rs6697618	0.95[ASN][1000 genomes]
rs6698031	0.95[ASN][1000 genomes]
rs6699802	0.95[ASN][1000 genomes]
rs6702420	0.95[ASN][1000 genomes]
rs7517856	0.81[ASN][1000 genomes]
rs9943237	0.94[ASN][1000 genomes]

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172460800-172466800	Enhancers	Fetal Intestine Large	intestine
2	chr1:172464200-172466800	Enhancers	K562	blood
3	chr1:172464600-172466800	Enhancers	Fetal Intestine Small	intestine
4	chr1:172464800-172467200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:172464800-172471000	Enhancers	Placenta Amnion	Placenta Amnion
6	chr1:172465000-172467000	Enhancers	Stomach Mucosa	stomach
7	chr1:172465000-172467800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:172465000-172468600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:172465600-172466800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr1:172465600-172470000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr1:172465800-172466800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:172465800-172466800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr1:172465800-172466800	Enhancers	Fetal Kidney	kidney
14	chr1:172465800-172467000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr1:172465800-172467200	Enhancers	Hela-S3	cervix
16	chr1:172465800-172470800	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr1:172466000-172466800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:172466000-172466800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:172466000-172466800	Enhancers	Fetal Lung	lung
20	chr1:172466000-172466800	Enhancers	Placenta	Placenta
21	chr1:172466000-172466800	Enhancers	Left Ventricle	heart
22	chr1:172466000-172466800	Enhancers	Rectal Smooth Muscle	rectum
23	chr1:172466000-172466800	Enhancers	HMEC	breast
24	chr1:172466000-172466800	Enhancers	NH-A	brain
25	chr1:172466000-172467000	Enhancers	Fetal Heart	heart
26	chr1:172466000-172467200	Enhancers	NHEK	skin
27	chr1:172466000-172467400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr1:172466000-172470000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:172466200-172466800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr1:172466200-172466800	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr1:172466200-172466800	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr1:172466200-172466800	Enhancers	Fetal Stomach	stomach
33	chr1:172466200-172467000	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr1:172466200-172467000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:172466200-172467000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr1:172466200-172467200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr1:172466200-172467600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:172466200-172470800	Weak transcription	Esophagus	oesophagus
39	chr1:172466400-172466800	Enhancers	H1 Cell Line	embryonic stem cell
40	chr1:172466400-172466800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:172466400-172466800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr1:172466400-172466800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr1:172466400-172466800	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr1:172466400-172466800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr1:172466400-172466800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr1:172466400-172466800	Enhancers	Pancreatic Islets	Pancreatic Islet
47	chr1:172466400-172466800	Enhancers	Fetal Muscle Trunk	muscle
48	chr1:172466400-172466800	Enhancers	Fetal Muscle Leg	muscle
49	chr1:172466400-172466800	Enhancers	Pancreas	Pancrea
50	chr1:172466400-172466800	Flanking Active TSS	Stomach Smooth Muscle	stomach

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