Variant report

Variant	rs7517856
Chromosome Location	chr1:172487670-172487671
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172486572..172488602-chr1:172489902..172492194,2	K562	blood:
2	chr1:172486406..172489055-chr1:172490176..172492363,2	MCF-7	breast:
3	chr1:172456081..172458698-chr1:172485174..172488166,2	K562	blood:
4	chr1:172486127..172488704-chr1:172497575..172501072,3	MCF-7	breast:
5	chr1:172485002..172486820-chr1:172486838..172488718,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10157501	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10752995	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10911830	0.87[ASN][1000 genomes]
rs10911833	0.86[ASN][1000 genomes]
rs10911843	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10911859	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911862	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911875	0.95[ASN][1000 genomes]
rs10911920	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912009	0.88[AMR][1000 genomes]
rs1159378	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11799659	0.84[ASN][1000 genomes]
rs12025433	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12041837	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12070393	0.81[AMR][1000 genomes]
rs12073872	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12093274	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12118647	0.85[ASN][1000 genomes]
rs12120798	0.86[ASN][1000 genomes]
rs12130435	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145007	0.85[ASN][1000 genomes]
rs2239816	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2239817	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2285143	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2285664	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2472549	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3754426	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56410307	0.81[ASN][1000 genomes]
rs6424954	0.86[ASN][1000 genomes]
rs6424955	0.87[ASN][1000 genomes]
rs6424956	0.86[ASN][1000 genomes]
rs6424965	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6657023	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6679222	0.86[ASN][1000 genomes]
rs6688929	0.87[ASN][1000 genomes]
rs6691320	0.86[ASN][1000 genomes]
rs6691528	0.86[ASN][1000 genomes]
rs6694111	0.86[ASN][1000 genomes]
rs6697618	0.86[ASN][1000 genomes]
rs6698031	0.86[ASN][1000 genomes]
rs6699802	0.86[ASN][1000 genomes]
rs6702420	0.86[ASN][1000 genomes]
rs7553020	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9943237	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947551	chr1:172485154-172490045	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7517856	SUCO	cis	lung	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172480800-172487800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr1:172484600-172487800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:172484800-172487800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:172485200-172488400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:172486200-172488400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:172486600-172487800	Enhancers	Primary hematopoietic stem cells	blood
7	chr1:172487400-172492200	Weak transcription	K562	blood

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