Variant report

Variant	rs10911843
Chromosome Location	chr1:172482854-172482855
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172480916..172486057-chr1:172500075..172503818,11	MCF-7	breast:
2	chr1:172466607..172473945-chr1:172474467..172485611,18	MCF-7	breast:
3	chr1:172464396..172473941-chr1:172479690..172484856,11	MCF-7	breast:
4	chr1:172475808..172477833-chr1:172482675..172484927,3	K562	blood:
5	chr1:172451991..172454175-chr1:172481120..172484587,3	MCF-7	breast:
6	chr1:172453456..172456009-chr1:172482062..172484146,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10157501	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10752995	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10911830	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10911833	0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10911859	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10911862	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10911875	0.93[ASN][1000 genomes]
rs10911920	0.83[ASW][hapmap];0.91[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.86[TSI][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10912009	0.86[AMR][1000 genomes]
rs1159378	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11799659	0.86[ASN][1000 genomes]
rs12025433	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12041837	0.87[AMR][1000 genomes]
rs12073872	0.87[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes]
rs12093274	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12118647	0.87[ASN][1000 genomes]
rs12120798	0.94[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs12130435	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12145007	0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2239816	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2239817	0.91[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2285143	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2285664	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2472549	0.91[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3754426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56410307	0.84[ASN][1000 genomes]
rs6424954	0.88[ASN][1000 genomes]
rs6424955	0.83[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[MKK][hapmap];0.89[YRI][hapmap];0.89[ASN][1000 genomes]
rs6424956	0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6424965	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6657023	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6679222	0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6688929	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6691320	0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6691528	0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6694111	0.88[ASN][1000 genomes]
rs6697618	0.88[ASN][1000 genomes]
rs6698031	0.88[ASN][1000 genomes]
rs6699802	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6702420	0.87[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs7514814	0.91[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap]
rs7517856	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7532580	0.91[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap]
rs7553020	0.88[AMR][1000 genomes]
rs9943237	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10911843	FMO2	cis	cerebellum	SCAN
rs10911843	SUCO	cis	lung	GTEx
rs10911843	MAEL	cis	cerebellum	SCAN
rs10911843	FMO1	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172480400-172483000	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr1:172480800-172487800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr1:172482200-172483200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:172482200-172483200	Enhancers	K562	blood
5	chr1:172482200-172483400	Enhancers	NHEK	skin
6	chr1:172482400-172484400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr1:172482400-172484600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr1:172482600-172483000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:172482800-172483600	Enhancers	Placenta Amnion	Placenta Amnion

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