Variant report

Variant	rs72725194
Chromosome Location	chr14:68575915-68575916
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68575119..68577360-chr14:69259605..69262119,2	MCF-7	breast:
2	chr14:68573827..68576752-chr14:68577004..68581266,3	MCF-7	breast:
3	chr14:68575893..68578427-chr14:69259534..69262485,2	MCF-7	breast:
4	chr14:68574384..68576780-chr14:68577094..68579795,2	MCF-7	breast:
5	chr14:68569512..68572428-chr14:68574318..68576460,3	MCF-7	breast:
6	chr14:68575697..68577939-chr14:68581509..68583841,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10132889	1.00[ASN][1000 genomes]
rs10136827	1.00[ASN][1000 genomes]
rs10136837	1.00[ASN][1000 genomes]
rs17105381	1.00[ASN][1000 genomes]
rs17105397	1.00[ASN][1000 genomes]
rs17193284	1.00[ASN][1000 genomes]
rs17755115	1.00[ASN][1000 genomes]
rs28460083	1.00[ASN][1000 genomes]
rs28503524	1.00[ASN][1000 genomes]
rs35763290	1.00[ASN][1000 genomes]
rs55978801	1.00[ASN][1000 genomes]
rs60900258	1.00[ASN][1000 genomes]
rs61623658	1.00[ASN][1000 genomes]
rs72725176	1.00[ASN][1000 genomes]
rs72725177	1.00[ASN][1000 genomes]
rs72725193	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725200	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9989140	1.00[ASN][1000 genomes]
rs9989153	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68569000-68576000	Weak transcription	Adipose Nuclei	Adipose
2	chr14:68569000-68578400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:68569200-68579200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr14:68569400-68576200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr14:68571400-68576200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr14:68571600-68576000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:68571600-68576000	Weak transcription	A549	lung
8	chr14:68571600-68577400	Weak transcription	Fetal Kidney	kidney
9	chr14:68571800-68576000	Weak transcription	Osteobl	bone
10	chr14:68571800-68580200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr14:68572000-68576000	Weak transcription	NHLF	lung
12	chr14:68572000-68580200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:68573400-68576200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr14:68573600-68576000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr14:68573600-68579400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr14:68573600-68580200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr14:68573800-68578400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:68573800-68578400	Weak transcription	NHEK	skin
19	chr14:68573800-68591800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr14:68574800-68577200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr14:68575200-68580800	Enhancers	NHDF-Ad	bronchial
22	chr14:68575600-68576200	Enhancers	Colon Smooth Muscle	Colon
23	chr14:68575600-68576600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:68575800-68576200	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr14:68575800-68576400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr14:68575800-68576400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr14:68575800-68576400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr14:68575800-68576600	Enhancers	Primary T cells from cord blood	blood
29	chr14:68575800-68576600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:68575800-68578200	Enhancers	Fetal Lung	lung
31	chr14:68575800-68578600	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr14:68575800-68578800	Enhancers	Rectal Smooth Muscle	rectum
33	chr14:68575800-68579400	Enhancers	Fetal Stomach	stomach
34	chr14:68575800-68579600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr14:68575800-68579600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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