Variant report

Variant	rs35763290
Chromosome Location	chr14:68759998-68759999
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68758764..68760372-chr14:69260521..69262938,2	MCF-7	breast:
2	chr14:68759580..68761142-chr14:68771842..68774363,2	MCF-7	breast:
3	chr14:68716325..68719103-chr14:68757433..68761699,4	MCF-7	breast:
4	chr14:68750556..68752152-chr14:68758382..68760171,2	K562	blood:
5	chr14:68758495..68760542-chr14:68773448..68775284,2	MCF-7	breast:
6	chr14:68758837..68760910-chr14:68771179..68773357,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10132889	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136827	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136837	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146680	0.93[EUR][1000 genomes]
rs10147024	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12323708	0.93[EUR][1000 genomes]
rs12437046	0.99[EUR][1000 genomes]
rs17105381	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105397	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105443	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17193284	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17755115	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104046	0.99[EUR][1000 genomes]
rs28460083	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28502384	0.93[EUR][1000 genomes]
rs28503524	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4083474	0.93[EUR][1000 genomes]
rs55978801	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60900258	1.00[ASN][1000 genomes]
rs61623658	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725193	1.00[ASN][1000 genomes]
rs72725194	1.00[ASN][1000 genomes]
rs72725200	1.00[ASN][1000 genomes]
rs8016350	0.93[EUR][1000 genomes]
rs911256	0.99[EUR][1000 genomes]
rs9323505	0.93[EUR][1000 genomes]
rs9323507	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9944146	0.99[EUR][1000 genomes]
rs9989140	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9989153	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68746600-68764600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:68750400-68761200	Weak transcription	Pancreas	Pancrea
3	chr14:68750800-68761800	Weak transcription	Left Ventricle	heart
4	chr14:68752400-68761600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:68752400-68765000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:68752400-68768800	Weak transcription	Aorta	Aorta
7	chr14:68752600-68761600	Weak transcription	Spleen	Spleen
8	chr14:68752600-68763800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr14:68753400-68768800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:68753600-68768600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:68753600-68768800	Weak transcription	Dnd41	blood
12	chr14:68754000-68760200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:68756400-68763400	Enhancers	Primary B cells from peripheral blood	blood
14	chr14:68756600-68765200	Enhancers	Fetal Intestine Small	intestine
15	chr14:68757800-68765200	Enhancers	Fetal Intestine Large	intestine
16	chr14:68758000-68760000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr14:68758000-68760400	Enhancers	Primary T cells fromperipheralblood	blood
18	chr14:68758000-68760600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr14:68758000-68761800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr14:68758200-68760200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr14:68758200-68760400	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr14:68758200-68760400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr14:68758200-68760600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr14:68758200-68760600	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr14:68758200-68760600	Enhancers	K562	blood
26	chr14:68758200-68761200	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr14:68758200-68761800	Enhancers	HepG2	liver
28	chr14:68758200-68762200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr14:68758200-68762800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr14:68758200-68762800	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr14:68758200-68762800	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr14:68758200-68763000	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr14:68758200-68763000	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr14:68758200-68765600	Enhancers	Primary T cells from cord blood	blood
35	chr14:68758400-68760200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr14:68758400-68760400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr14:68758400-68760400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr14:68758400-68760600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr14:68758400-68760600	Enhancers	Rectal Smooth Muscle	rectum
40	chr14:68758400-68760800	Enhancers	Duodenum Mucosa	Duodenum
41	chr14:68758400-68762200	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr14:68758400-68762400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr14:68758400-68762600	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr14:68758400-68762600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr14:68758400-68763600	Enhancers	Colon Smooth Muscle	Colon
46	chr14:68758400-68765600	Enhancers	Fetal Kidney	kidney
47	chr14:68758400-68765600	Enhancers	Fetal Muscle Leg	muscle
48	chr14:68758600-68760400	Enhancers	Fetal Thymus	thymus
49	chr14:68758600-68760400	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr14:68758600-68760600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links