Variant report

Variant	rs9989153
Chromosome Location	chr14:68796192-68796193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68785289..68787914-chr14:68794616..68796810,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10132889	1.00[CEU][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136827	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136837	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143539	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs10146680	0.91[CEU][hapmap];1.00[EUR][1000 genomes]
rs10147024	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12323708	0.91[CEU][hapmap];1.00[EUR][1000 genomes]
rs12323739	0.87[YRI][hapmap]
rs12437046	0.95[EUR][1000 genomes]
rs17105381	0.81[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105397	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105443	1.00[CEU][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17193284	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17755115	0.90[CEU][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104046	0.95[EUR][1000 genomes]
rs28460083	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28502384	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28503524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35763290	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4083474	0.91[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs55978801	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60900258	1.00[ASN][1000 genomes]
rs61623658	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725193	1.00[ASN][1000 genomes]
rs72725194	1.00[ASN][1000 genomes]
rs72725200	1.00[ASN][1000 genomes]
rs8016350	0.91[CEU][hapmap];1.00[EUR][1000 genomes]
rs911256	0.91[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs9323505	0.91[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9323507	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9944146	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9989140	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68769000-68810000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68785600-68812400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr14:68786600-68799000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr14:68786800-68798800	Weak transcription	Brain Anterior Caudate	brain
5	chr14:68787400-68798400	Weak transcription	Fetal Stomach	stomach
6	chr14:68788200-68807000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr14:68788400-68796600	Weak transcription	Fetal Lung	lung
8	chr14:68789600-68810400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:68790800-68799200	Weak transcription	Fetal Muscle Leg	muscle
10	chr14:68792600-68798200	Weak transcription	Fetal Intestine Small	intestine
11	chr14:68793800-68798200	Weak transcription	Colon Smooth Muscle	Colon
12	chr14:68794400-68797400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr14:68794400-68798000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr14:68795000-68798200	Weak transcription	Primary B cells from cord blood	blood
15	chr14:68795400-68796400	Enhancers	GM12878-XiMat	blood
16	chr14:68795400-68799200	Weak transcription	Primary B cells from peripheral blood	blood

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