Variant report

Variant	rs10147024
Chromosome Location	chr14:68811239-68811240
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68797384..68800129-chr14:68809250..68811315,3	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10132889	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136827	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136837	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146680	0.92[EUR][1000 genomes]
rs12323708	0.92[EUR][1000 genomes]
rs12437046	0.87[EUR][1000 genomes]
rs17105381	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105397	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105443	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17193284	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17755115	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104046	0.87[EUR][1000 genomes]
rs28460083	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28502384	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28503524	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35763290	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4083474	0.92[EUR][1000 genomes]
rs55978801	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60900258	1.00[ASN][1000 genomes]
rs61623658	1.00[ASN][1000 genomes]
rs72725200	1.00[ASN][1000 genomes]
rs8016350	0.92[EUR][1000 genomes]
rs911256	0.87[EUR][1000 genomes]
rs9323505	0.92[EUR][1000 genomes]
rs9323507	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9944146	0.87[EUR][1000 genomes]
rs9989140	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9989153	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68785600-68812400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:68804000-68813400	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:68804400-68812800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr14:68808600-68812200	Weak transcription	Fetal Muscle Leg	muscle
5	chr14:68808600-68819200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:68808800-68812200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:68808800-68813000	Weak transcription	Brain Anterior Caudate	brain
8	chr14:68808800-68813000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:68809000-68816400	Weak transcription	Fetal Intestine Large	intestine
10	chr14:68809200-68812000	Weak transcription	Fetal Intestine Small	intestine
11	chr14:68809200-68812200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:68809200-68813200	Weak transcription	Small Intestine	intestine
13	chr14:68809400-68812400	Weak transcription	Fetal Stomach	stomach
14	chr14:68809400-68813200	Weak transcription	Primary B cells from cord blood	blood
15	chr14:68810600-68813000	Weak transcription	Fetal Lung	lung
16	chr14:68810800-68813000	Weak transcription	Brain Hippocampus Middle	brain
17	chr14:68811000-68811800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:68811000-68812000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr14:68811000-68813200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr14:68811000-68813600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr14:68811000-68816400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr14:68811000-68829800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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