Variant report

Variant	rs17105381
Chromosome Location	chr14:68776450-68776451
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68770678..68778907-chr14:69255944..69264299,32	MCF-7	breast:
2	chr14:68771546..68782546-chr14:69251132..69265678,35	MCF-7	breast:
3	chr14:68774156..68777438-chr14:68786108..68788577,3	MCF-7	breast:
4	chr14:68773574..68776467-chr14:68830101..68831913,2	MCF-7	breast:
5	chr14:68773930..68776459-chr14:69021069..69023168,2	MCF-7	breast:
6	chr14:68774941..68776993-chr14:68858401..68860071,2	MCF-7	breast:
7	chr14:68775479..68777224-chr14:69038956..69041155,2	MCF-7	breast:
8	chr14:68612130..68613660-chr14:68774074..68776963,2	MCF-7	breast:
9	chr14:68773192..68776654-chr14:68782596..68784828,4	MCF-7	breast:
10	chr14:68771578..68778202-chr14:68921843..68928978,14	MCF-7	breast:
11	chr14:68774488..68779341-chr14:69281641..69286880,6	MCF-7	breast:
12	chr14:68710270..68718985-chr14:68771545..68777065,19	MCF-7	breast:
13	chr14:68775195..68777940-chr14:69277333..69279325,2	MCF-7	breast:
14	chr14:68773029..68777937-chr14:68858584..68866534,13	MCF-7	breast:
15	chr14:68776230..68777818-chr14:69035775..69037380,2	MCF-7	breast:
16	chr14:68775050..68777034-chr14:68923914..68926374,3	MCF-7	breast:
17	chr14:68775995..68776757-chr14:68925476..68926025,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10132889	0.81[CEU][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136827	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136837	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143539	0.90[YRI][hapmap];0.85[AFR][1000 genomes]
rs10146680	0.95[EUR][1000 genomes]
rs10147024	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12323708	0.95[EUR][1000 genomes]
rs12323739	0.88[YRI][hapmap]
rs12437046	0.91[CEU][hapmap];1.00[EUR][1000 genomes]
rs17105397	0.81[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105443	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17193284	0.81[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17755115	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104046	1.00[EUR][1000 genomes]
rs28460083	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28502384	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28503524	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35763290	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4083474	0.95[EUR][1000 genomes]
rs55978801	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60900258	1.00[ASN][1000 genomes]
rs61623658	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725193	1.00[ASN][1000 genomes]
rs72725194	1.00[ASN][1000 genomes]
rs72725200	1.00[ASN][1000 genomes]
rs8016350	0.95[EUR][1000 genomes]
rs911256	1.00[EUR][1000 genomes]
rs9323505	0.95[EUR][1000 genomes]
rs9323507	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9944146	0.81[CEU][hapmap];1.00[EUR][1000 genomes]
rs9989140	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9989153	0.81[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68760400-68776800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:68769000-68810000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68772000-68777800	Enhancers	Fetal Kidney	kidney
4	chr14:68772000-68788400	Enhancers	Primary B cells from peripheral blood	blood
5	chr14:68772600-68777000	Enhancers	Fetal Lung	lung
6	chr14:68772600-68788000	Weak transcription	Lung	lung
7	chr14:68773000-68777000	Enhancers	Colon Smooth Muscle	Colon
8	chr14:68773000-68777000	Enhancers	Rectal Smooth Muscle	rectum
9	chr14:68773400-68776600	Enhancers	Fetal Muscle Leg	muscle
10	chr14:68773400-68776600	Enhancers	Fetal Stomach	stomach
11	chr14:68773800-68776800	Weak transcription	Small Intestine	intestine
12	chr14:68773800-68777000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr14:68773800-68777000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr14:68774000-68776600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:68774000-68776800	Enhancers	Osteobl	bone
16	chr14:68774000-68777000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr14:68774200-68777800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:68774400-68785200	Weak transcription	Psoas Muscle	Psoas
19	chr14:68774800-68778000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr14:68774800-68778400	Enhancers	Primary B cells from cord blood	blood
21	chr14:68774800-68779000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr14:68774800-68779600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:68774800-68780200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr14:68775000-68779000	Weak transcription	HepG2	liver
25	chr14:68775000-68779400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr14:68775400-68777000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr14:68775400-68777000	Enhancers	Adipose Nuclei	Adipose
28	chr14:68775600-68777200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr14:68775600-68777200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr14:68775600-68777400	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr14:68775600-68779000	Enhancers	Primary T cells from cord blood	blood
32	chr14:68775600-68780000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr14:68775800-68777000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr14:68775800-68779000	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr14:68775800-68779200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr14:68775800-68780000	Weak transcription	Fetal Brain Male	brain
37	chr14:68775800-68781000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr14:68776000-68776600	Enhancers	Brain Substantia Nigra	brain
39	chr14:68776000-68776600	Enhancers	Ovary	ovary
40	chr14:68776000-68776600	Enhancers	Spleen	Spleen
41	chr14:68776000-68776600	Enhancers	NHDF-Ad	bronchial
42	chr14:68776000-68776800	Enhancers	NHEK	skin
43	chr14:68776000-68777000	Enhancers	Fetal Thymus	thymus
44	chr14:68776000-68777000	Enhancers	Pancreas	Pancrea
45	chr14:68776000-68777200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr14:68776000-68777200	Enhancers	HUVEC	blood vessel
47	chr14:68776000-68777400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr14:68776000-68778000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr14:68776000-68779000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr14:68776000-68779000	Weak transcription	Liver	Liver

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