Variant report

Variant	rs61623658
Chromosome Location	chr14:68742621-68742622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68334516..68336214-chr14:68741208..68743110,2	MCF-7	breast:
2	chr14:68740676..68743465-chr14:68744041..68745922,2	K562	blood:
3	chr14:68740932..68744536-chr14:69121884..69124192,3	MCF-7	breast:
4	chr14:68721166..68724002-chr14:68741604..68744207,2	MCF-7	breast:
5	chr14:68739624..68742701-chr14:69255913..69259570,3	MCF-7	breast:
6	chr14:68742486..68746272-chr14:68747119..68750722,4	MCF-7	breast:
7	chr14:68740011..68745148-chr14:69257189..69263006,8	MCF-7	breast:
8	chr14:68741150..68743310-chr14:69260106..69262299,3	MCF-7	breast:
9	chr14:68736827..68740855-chr14:68741614..68744928,4	MCF-7	breast:
10	chr14:68741974..68743530-chr14:68829514..68831281,2	MCF-7	breast:
11	chr14:68740444..68743175-chr14:69252311..69254670,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10132889	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136827	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136837	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146680	0.84[EUR][1000 genomes]
rs10147024	1.00[ASN][1000 genomes]
rs12323708	0.84[EUR][1000 genomes]
rs12437046	0.89[EUR][1000 genomes]
rs17105381	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105397	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105443	1.00[ASN][1000 genomes]
rs17193284	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17755115	1.00[ASN][1000 genomes]
rs2104046	0.89[EUR][1000 genomes]
rs28460083	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28502384	0.84[EUR][1000 genomes]
rs28503524	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35763290	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4083474	0.84[EUR][1000 genomes]
rs55978801	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60900258	1.00[ASN][1000 genomes]
rs72725176	1.00[ASN][1000 genomes]
rs72725177	1.00[ASN][1000 genomes]
rs72725193	1.00[ASN][1000 genomes]
rs72725194	1.00[ASN][1000 genomes]
rs72725200	1.00[ASN][1000 genomes]
rs8016350	0.84[EUR][1000 genomes]
rs911256	0.89[EUR][1000 genomes]
rs9323505	0.84[EUR][1000 genomes]
rs9323507	1.00[ASN][1000 genomes]
rs9944146	0.89[EUR][1000 genomes]
rs9989140	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9989153	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68729200-68749400	Weak transcription	Lung	lung
2	chr14:68730000-68745000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:68731600-68746000	Enhancers	Primary B cells from peripheral blood	blood
4	chr14:68731800-68749000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:68732600-68743600	Enhancers	Primary T cells from cord blood	blood
6	chr14:68736200-68745000	Weak transcription	Liver	Liver
7	chr14:68736400-68745400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:68736600-68745200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr14:68736600-68745200	Weak transcription	HSMMtube	muscle
10	chr14:68736600-68745400	Weak transcription	Spleen	Spleen
11	chr14:68737000-68745200	Weak transcription	Brain Hippocampus Middle	brain
12	chr14:68737400-68744800	Weak transcription	HepG2	liver
13	chr14:68737400-68745200	Weak transcription	Psoas Muscle	Psoas
14	chr14:68737400-68745400	Weak transcription	Brain Anterior Caudate	brain
15	chr14:68738000-68745000	Weak transcription	Fetal Kidney	kidney
16	chr14:68739000-68750000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr14:68739200-68745200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr14:68739200-68748200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr14:68740000-68750200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr14:68740000-68751600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr14:68740200-68746600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr14:68740400-68742800	Enhancers	Primary hematopoietic stem cells	blood
23	chr14:68740400-68744600	Weak transcription	Pancreas	Pancrea
24	chr14:68740400-68745800	Weak transcription	Ovary	ovary
25	chr14:68740800-68742800	Enhancers	K562	blood
26	chr14:68740800-68744000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr14:68741000-68743200	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr14:68741200-68743000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr14:68741200-68743000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr14:68741200-68743000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr14:68741200-68743000	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr14:68741200-68743200	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr14:68741200-68743600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr14:68741400-68742800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr14:68741400-68743000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr14:68741400-68743800	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr14:68741600-68743200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr14:68741800-68742800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr14:68741800-68742800	Enhancers	Primary T cells fromperipheralblood	blood
40	chr14:68741800-68743600	Enhancers	Fetal Thymus	thymus
41	chr14:68742200-68742800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr14:68742200-68743000	Enhancers	Dnd41	blood
43	chr14:68742200-68743800	Enhancers	Primary B cells from cord blood	blood
44	chr14:68742200-68744800	Weak transcription	A549	lung
45	chr14:68742400-68742800	Enhancers	Small Intestine	intestine
46	chr14:68742400-68743000	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr14:68742400-68745200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr14:68742400-68745800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr14:68742600-68742800	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr14:68742600-68743000	Enhancers	Colon Smooth Muscle	Colon

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