Variant report

Variant	rs10132889
Chromosome Location	chr14:68761523-68761524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68716325..68719103-chr14:68757433..68761699,4	MCF-7	breast:
2	chr14:68750225..68753988-chr14:68760767..68763895,3	K562	blood:
3	chr14:68760208..68761928-chr14:69260094..69262955,2	K562	blood:
4	chr14:68760176..68762768-chr14:69258282..69260284,2	MCF-7	breast:
5	chr14:68729921..68731591-chr14:68760748..68763358,2	MCF-7	breast:
6	chr14:68760897..68764007-chr14:68767297..68769142,3	K562	blood:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10136827	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136837	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143539	0.95[YRI][hapmap]
rs10146680	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs10147024	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12323708	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs12323739	0.93[YRI][hapmap]
rs12437046	1.00[EUR][1000 genomes]
rs17105381	0.81[CEU][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105397	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105443	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17193284	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17755115	0.90[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104046	1.00[EUR][1000 genomes]
rs28460083	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28502384	0.95[EUR][1000 genomes]
rs28503524	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35763290	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4083474	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs55978801	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60900258	1.00[ASN][1000 genomes]
rs61623658	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725193	1.00[ASN][1000 genomes]
rs72725194	1.00[ASN][1000 genomes]
rs72725200	1.00[ASN][1000 genomes]
rs8016350	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs911256	0.91[CEU][hapmap];1.00[EUR][1000 genomes]
rs9323505	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs9323507	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9944146	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9989140	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9989153	1.00[CEU][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68746600-68764600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:68750800-68761800	Weak transcription	Left Ventricle	heart
3	chr14:68752400-68761600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:68752400-68765000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr14:68752400-68768800	Weak transcription	Aorta	Aorta
6	chr14:68752600-68761600	Weak transcription	Spleen	Spleen
7	chr14:68752600-68763800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:68753400-68768800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr14:68753600-68768600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:68753600-68768800	Weak transcription	Dnd41	blood
11	chr14:68756400-68763400	Enhancers	Primary B cells from peripheral blood	blood
12	chr14:68756600-68765200	Enhancers	Fetal Intestine Small	intestine
13	chr14:68757800-68765200	Enhancers	Fetal Intestine Large	intestine
14	chr14:68758000-68761800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr14:68758200-68761800	Enhancers	HepG2	liver
16	chr14:68758200-68762200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr14:68758200-68762800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr14:68758200-68762800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr14:68758200-68762800	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr14:68758200-68763000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr14:68758200-68763000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr14:68758200-68765600	Enhancers	Primary T cells from cord blood	blood
23	chr14:68758400-68762200	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr14:68758400-68762400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr14:68758400-68762600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr14:68758400-68762600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr14:68758400-68763600	Enhancers	Colon Smooth Muscle	Colon
28	chr14:68758400-68765600	Enhancers	Fetal Kidney	kidney
29	chr14:68758400-68765600	Enhancers	Fetal Muscle Leg	muscle
30	chr14:68758600-68765200	Enhancers	Fetal Lung	lung
31	chr14:68758800-68761600	Weak transcription	Gastric	stomach
32	chr14:68759000-68761800	Weak transcription	Psoas Muscle	Psoas
33	chr14:68759000-68762000	Weak transcription	NHLF	lung
34	chr14:68759000-68768400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr14:68759600-68761800	Weak transcription	Lung	lung
36	chr14:68759600-68762000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr14:68759600-68762200	Weak transcription	Brain Anterior Caudate	brain
38	chr14:68759600-68762800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr14:68759600-68763400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr14:68759800-68761600	Weak transcription	Placenta	Placenta
41	chr14:68760000-68761600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr14:68760000-68768800	Weak transcription	Thymus	Thymus
43	chr14:68760200-68761600	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr14:68760200-68763600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr14:68760400-68761600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr14:68760400-68761600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr14:68760400-68761600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr14:68760400-68761600	Weak transcription	Fetal Stomach	stomach
49	chr14:68760400-68761600	Weak transcription	Fetal Thymus	thymus
50	chr14:68760400-68761600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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