Variant report

Variant	rs17105443
Chromosome Location	chr14:68815099-68815100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68806501..68808073-chr14:68812909..68815753,2	MCF-7	breast:
2	chr14:68813990..68815788-chr14:69260981..69262578,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10132889	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136827	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136837	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146680	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs10147024	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12323708	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs12437046	0.89[EUR][1000 genomes]
rs17105381	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105397	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17193284	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17755115	0.90[CEU][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104046	0.89[EUR][1000 genomes]
rs28460083	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28502384	0.95[EUR][1000 genomes]
rs28503524	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35763290	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4083474	0.91[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs55978801	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60900258	1.00[ASN][1000 genomes]
rs61623658	1.00[ASN][1000 genomes]
rs72725200	1.00[ASN][1000 genomes]
rs8016350	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs911256	0.91[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs9323505	0.91[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs9323507	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9944146	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9989140	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9989153	1.00[CEU][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68808600-68819200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr14:68809000-68816400	Weak transcription	Fetal Intestine Large	intestine
3	chr14:68811000-68816400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr14:68811000-68829800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr14:68811800-68816400	Weak transcription	Fetal Brain Male	brain
6	chr14:68812400-68818600	Enhancers	Fetal Stomach	stomach
7	chr14:68812800-68816000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:68813400-68816400	Weak transcription	Fetal Thymus	thymus
9	chr14:68813600-68825600	Weak transcription	Primary B cells from cord blood	blood
10	chr14:68813800-68815400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr14:68813800-68815600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr14:68813800-68816400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr14:68814000-68816400	Weak transcription	Fetal Kidney	kidney
14	chr14:68814200-68815400	Weak transcription	HepG2	liver
15	chr14:68814200-68816400	Weak transcription	Colon Smooth Muscle	Colon
16	chr14:68814200-68816400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr14:68814200-68820400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr14:68814400-68815800	Weak transcription	Fetal Intestine Small	intestine
19	chr14:68814400-68816200	Weak transcription	Fetal Muscle Leg	muscle
20	chr14:68814600-68815800	Weak transcription	Fetal Lung	lung
21	chr14:68814800-68816200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr14:68814800-68817200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr14:68814800-68818200	Weak transcription	Primary B cells from peripheral blood	blood

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