Variant report

Variant	rs72736117
Chromosome Location	chr9:110026378-110026379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11573614	0.86[AMR][1000 genomes]
rs11573622	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11573628	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11573629	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11573648	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11573675	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11573691	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11573693	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11573695	0.86[EUR][1000 genomes]
rs11573732	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1805330	0.86[EUR][1000 genomes]
rs41555117	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58278531	0.86[EUR][1000 genomes]
rs67197321	0.92[EUR][1000 genomes]
rs7038659	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72736111	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72736112	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72736120	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736121	0.94[EUR][1000 genomes]
rs72736122	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736180	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736182	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736185	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736186	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736187	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736188	0.94[EUR][1000 genomes]
rs72736192	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736196	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72736197	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72736198	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72736199	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72736200	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72738204	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72738207	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72738211	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72738212	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72738213	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72738215	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72738216	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72738220	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72738224	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72738225	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72738229	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893698	chr9:109998563-110052660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv508560	chr9:110006490-110060539	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110023400-110028800	Weak transcription	HMEC	breast
2	chr9:110023400-110031400	Weak transcription	A549	lung
3	chr9:110023800-110027400	Weak transcription	Adipose Nuclei	Adipose
4	chr9:110023800-110027600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:110023800-110029000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:110023800-110031600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:110023800-110031600	Weak transcription	Placenta	Placenta
8	chr9:110023800-110031600	Weak transcription	HSMMtube	muscle
9	chr9:110024000-110031600	Weak transcription	NHDF-Ad	bronchial
10	chr9:110025800-110029000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:110026200-110028800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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