Variant report

Variant	rs72736122
Chromosome Location	chr9:110032698-110032699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110030231..110032782-chr9:110035060..110038842,3	MCF-7	breast:
2	chr9:110021549..110024530-chr9:110031690..110034147,2	MCF-7	breast:
3	chr9:110030757..110033354-chr9:110044206..110047003,3	MCF-7	breast:
4	chr9:110031224..110033017-chr9:110046490..110048325,2	K562	blood:
5	chr9:110007873..110010290-chr9:110031092..110033178,2	K562	blood:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11573614	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11573622	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11573628	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11573629	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11573648	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11573675	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11573691	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11573693	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11573695	0.92[EUR][1000 genomes]
rs11573732	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1805330	0.92[EUR][1000 genomes]
rs41555117	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58278531	0.92[EUR][1000 genomes]
rs67197321	0.98[EUR][1000 genomes]
rs7038659	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72736111	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736112	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736117	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736120	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736121	1.00[EUR][1000 genomes]
rs72736180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736182	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736187	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736188	1.00[EUR][1000 genomes]
rs72736192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736196	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72736197	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72736198	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72736199	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72736200	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72738204	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72738207	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72738211	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72738212	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72738213	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72738215	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72738216	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72738220	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72738224	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72738225	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72738229	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893698	chr9:109998563-110052660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv508560	chr9:110006490-110060539	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv3386089	chr9:110032581-110035729	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110028200-110032800	Weak transcription	Pancreas	Pancrea
2	chr9:110029400-110032800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:110029400-110035800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:110031400-110033400	Enhancers	Adipose Nuclei	Adipose
5	chr9:110031600-110033000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:110031600-110033000	Enhancers	Fetal Intestine Small	intestine
7	chr9:110031600-110033200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:110031600-110033200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:110031600-110033200	Enhancers	Fetal Intestine Large	intestine
10	chr9:110031600-110033200	Enhancers	Placenta	Placenta
11	chr9:110031600-110033200	Enhancers	Ovary	ovary
12	chr9:110031600-110033200	Enhancers	HSMMtube	muscle
13	chr9:110031600-110033200	Enhancers	NHLF	lung
14	chr9:110031600-110033200	Enhancers	Osteobl	bone
15	chr9:110031600-110033400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:110031600-110033400	Enhancers	HMEC	breast
17	chr9:110031600-110033400	Enhancers	NHDF-Ad	bronchial
18	chr9:110031800-110033000	Flanking Active TSS	A549	lung
19	chr9:110031800-110033000	Flanking Active TSS	HepG2	liver
20	chr9:110031800-110033200	Enhancers	Fetal Lung	lung
21	chr9:110031800-110033200	Enhancers	Hela-S3	cervix
22	chr9:110032000-110033400	Enhancers	Stomach Mucosa	stomach
23	chr9:110032200-110033000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:110032200-110033000	Enhancers	Duodenum Mucosa	Duodenum
25	chr9:110032200-110033200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:110032600-110032800	Flanking Active TSS	Liver	Liver
27	chr9:110032600-110033400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:110032600-110033400	Enhancers	HSMM	muscle
29	chr9:110032600-110036600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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