Variant report

Variant	rs72738229
Chromosome Location	chr9:110100977-110100978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108672760..108675101-chr9:110098994..110101048,2	MCF-7	breast:
2	chr9:110099927..110101842-chr9:110102042..110103767,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RAD23B-1	chr9:110100744-110101430	XLOC_007505

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11573622	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11573628	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11573629	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11573648	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11573675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573691	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573695	0.98[EUR][1000 genomes]
rs11573732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1805330	0.98[EUR][1000 genomes]
rs41555117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58278531	0.98[EUR][1000 genomes]
rs6477569	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67197321	0.92[EUR][1000 genomes]
rs7038659	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72736111	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72736112	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72736117	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72736120	0.94[EUR][1000 genomes]
rs72736121	0.94[EUR][1000 genomes]
rs72736122	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736180	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736182	0.94[EUR][1000 genomes]
rs72736185	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736186	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736187	0.94[EUR][1000 genomes]
rs72736188	0.94[EUR][1000 genomes]
rs72736192	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736196	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72736197	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72736198	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72736199	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72736200	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72738204	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72738207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738220	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv1042965	chr9:110100745-110126661	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110070200-110104400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:110071400-110103000	Weak transcription	Stomach Mucosa	stomach
3	chr9:110087600-110103400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr9:110088400-110101400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:110088600-110101600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:110090400-110101800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:110091000-110103000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:110092000-110101800	Strong transcription	Primary T cells from cord blood	blood
9	chr9:110093000-110103400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr9:110093200-110101800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:110093200-110103200	Strong transcription	A549	lung
12	chr9:110093200-110103400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr9:110094600-110101600	Strong transcription	H9 Cell Line	embryonic stem cell
14	chr9:110094800-110101800	Strong transcription	Fetal Intestine Small	intestine
15	chr9:110095000-110104600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:110095400-110101600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:110095600-110103400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr9:110096000-110103400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr9:110096200-110103200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr9:110096200-110103400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr9:110096600-110103200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:110096600-110103400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr9:110096600-110103400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr9:110096800-110101000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr9:110096800-110102600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr9:110096800-110103400	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr9:110096800-110103400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr9:110096800-110107200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr9:110097000-110102600	Weak transcription	Colonic Mucosa	Colon
30	chr9:110097000-110103200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr9:110097000-110103200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr9:110097000-110103400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr9:110097000-110103400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr9:110097000-110103400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr9:110097000-110103400	Weak transcription	Gastric	stomach
36	chr9:110097000-110103600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr9:110097000-110103600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr9:110097000-110104600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr9:110097000-110107200	Weak transcription	Fetal Kidney	kidney
40	chr9:110097000-110107600	Weak transcription	Primary hematopoietic stem cells	blood
41	chr9:110097200-110101000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr9:110097200-110103600	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr9:110097200-110113800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr9:110097400-110101000	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr9:110097400-110103200	Weak transcription	Primary B cells from cord blood	blood
46	chr9:110097600-110101000	Genic enhancers	NHLF	lung
47	chr9:110097600-110101200	Genic enhancers	HSMM	muscle
48	chr9:110097600-110103200	Weak transcription	Fetal Thymus	thymus
49	chr9:110097600-110103400	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr9:110097800-110103200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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