Variant report

Variant	rs72738225
Chromosome Location	chr9:110098415-110098416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110045522..110047351-chr9:110097744..110099500,2	MCF-7	breast:
2	chr9:110044860..110047881-chr9:110095955..110100656,5	MCF-7	breast:
3	chr9:110097867..110099488-chr9:110212610..110214111,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11573622	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11573628	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11573629	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11573648	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11573675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573691	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573695	0.98[EUR][1000 genomes]
rs11573732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1805330	0.98[EUR][1000 genomes]
rs41555117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58278531	0.98[EUR][1000 genomes]
rs6477569	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67197321	0.92[EUR][1000 genomes]
rs7038659	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72736111	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72736112	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72736117	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72736120	0.94[EUR][1000 genomes]
rs72736121	0.94[EUR][1000 genomes]
rs72736122	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736180	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736182	0.94[EUR][1000 genomes]
rs72736185	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736186	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736187	0.94[EUR][1000 genomes]
rs72736188	0.94[EUR][1000 genomes]
rs72736192	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736196	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72736197	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72736198	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72736199	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72736200	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72738204	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72738207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738220	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110058600-110098600	Weak transcription	Small Intestine	intestine
2	chr9:110065600-110098600	Strong transcription	Dnd41	blood
3	chr9:110070200-110104400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:110070400-110099400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:110071400-110103000	Weak transcription	Stomach Mucosa	stomach
6	chr9:110079600-110098800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:110084800-110098800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:110087200-110098600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr9:110087600-110103400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr9:110088400-110098800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:110088400-110101400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr9:110088600-110098600	Weak transcription	Fetal Brain Male	brain
13	chr9:110088600-110101600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:110089800-110099400	Strong transcription	Placenta	Placenta
15	chr9:110090400-110098600	Strong transcription	Fetal Muscle Leg	muscle
16	chr9:110090400-110098600	Strong transcription	HUVEC	blood vessel
17	chr9:110090400-110101800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:110091000-110103000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:110091200-110099000	Weak transcription	Spleen	Spleen
20	chr9:110092000-110101800	Strong transcription	Primary T cells from cord blood	blood
21	chr9:110093000-110103400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr9:110093200-110101800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:110093200-110103200	Strong transcription	A549	lung
24	chr9:110093200-110103400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr9:110094600-110101600	Strong transcription	H9 Cell Line	embryonic stem cell
26	chr9:110094800-110100800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:110094800-110101800	Strong transcription	Fetal Intestine Small	intestine
28	chr9:110095000-110104600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr9:110095400-110099600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:110095400-110101600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr9:110095600-110103400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr9:110096000-110100400	Weak transcription	Fetal Heart	heart
33	chr9:110096000-110103400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr9:110096200-110099000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr9:110096200-110103200	Weak transcription	Primary B cells from peripheral blood	blood
36	chr9:110096200-110103400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr9:110096600-110103200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:110096600-110103400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr9:110096600-110103400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr9:110096800-110098800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr9:110096800-110099200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr9:110096800-110099400	Weak transcription	Lung	lung
43	chr9:110096800-110100600	Weak transcription	Fetal Brain Female	brain
44	chr9:110096800-110101000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr9:110096800-110102600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr9:110096800-110103400	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr9:110096800-110103400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr9:110096800-110107200	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr9:110097000-110098600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr9:110097000-110098600	Weak transcription	Esophagus	oesophagus

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