Variant report

Variant	rs72736187
Chromosome Location	chr9:110038246-110038247
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110004629..110007184-chr9:110036620..110038464,2	MCF-7	breast:
2	chr9:110037191..110040266-chr9:110043063..110045811,4	K562	blood:
3	chr9:110030231..110032782-chr9:110035060..110038842,3	MCF-7	breast:
4	chr9:110034708..110043058-chr9:110043083..110050663,16	MCF-7	breast:
5	chr9:110038034..110040721-chr9:110051893..110053905,2	MCF-7	breast:
6	chr9:110037400..110041134-chr9:110041455..110046032,7	K562	blood:
7	chr9:110036136..110039453-chr9:110043491..110047008,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11573614	0.82[EUR][1000 genomes]
rs11573622	0.98[EUR][1000 genomes]
rs11573628	0.92[EUR][1000 genomes]
rs11573629	0.98[EUR][1000 genomes]
rs11573648	0.98[EUR][1000 genomes]
rs11573675	0.94[EUR][1000 genomes]
rs11573691	0.94[EUR][1000 genomes]
rs11573693	0.94[EUR][1000 genomes]
rs11573695	0.92[EUR][1000 genomes]
rs11573732	0.94[EUR][1000 genomes]
rs1805330	0.92[EUR][1000 genomes]
rs41555117	0.94[EUR][1000 genomes]
rs58278531	0.92[EUR][1000 genomes]
rs67197321	0.98[EUR][1000 genomes]
rs7038659	0.98[EUR][1000 genomes]
rs72736111	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736112	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736117	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736120	1.00[EUR][1000 genomes]
rs72736121	1.00[EUR][1000 genomes]
rs72736122	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736180	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736185	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736186	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736188	1.00[EUR][1000 genomes]
rs72736192	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736196	0.98[EUR][1000 genomes]
rs72736197	0.98[EUR][1000 genomes]
rs72736198	0.98[EUR][1000 genomes]
rs72736199	0.98[EUR][1000 genomes]
rs72736200	0.98[EUR][1000 genomes]
rs72738204	0.98[EUR][1000 genomes]
rs72738207	0.94[EUR][1000 genomes]
rs72738211	0.94[EUR][1000 genomes]
rs72738212	0.94[EUR][1000 genomes]
rs72738213	0.94[EUR][1000 genomes]
rs72738215	0.94[EUR][1000 genomes]
rs72738216	0.94[EUR][1000 genomes]
rs72738220	0.94[EUR][1000 genomes]
rs72738224	0.94[EUR][1000 genomes]
rs72738225	0.94[EUR][1000 genomes]
rs72738229	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893698	chr9:109998563-110052660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv508560	chr9:110006490-110060539	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110035600-110039400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:110035600-110040200	Enhancers	NHLF	lung
3	chr9:110035600-110040400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:110035600-110040400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:110035600-110044600	Enhancers	Placenta	Placenta
6	chr9:110035800-110040200	Enhancers	HSMMtube	muscle
7	chr9:110035800-110040400	Enhancers	Fetal Heart	heart
8	chr9:110036000-110038400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:110036000-110038800	Enhancers	HSMM	muscle
10	chr9:110036000-110039800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr9:110036000-110040000	Enhancers	Osteobl	bone
12	chr9:110036200-110038400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:110036200-110039200	Enhancers	Adipose Nuclei	Adipose
14	chr9:110036200-110040400	Enhancers	Fetal Muscle Leg	muscle
15	chr9:110036400-110044400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr9:110037000-110038600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:110037600-110038600	Weak transcription	Fetal Stomach	stomach
18	chr9:110037800-110038800	Weak transcription	Left Ventricle	heart
19	chr9:110037800-110038800	Weak transcription	Ovary	ovary
20	chr9:110037800-110040000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr9:110037800-110044000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:110038000-110039200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr9:110038000-110039400	Weak transcription	Colon Smooth Muscle	Colon
24	chr9:110038000-110039400	Weak transcription	A549	lung
25	chr9:110038000-110039800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:110038000-110040000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:110038000-110042200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:110038000-110042200	Weak transcription	NHEK	skin
29	chr9:110038000-110043000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr9:110038000-110044400	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr9:110038000-110044400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr9:110038000-110044400	Weak transcription	NH-A	brain
33	chr9:110038200-110038400	Enhancers	GM12878-XiMat	blood
34	chr9:110038200-110040000	Enhancers	NHDF-Ad	bronchial
35	chr9:110038200-110042200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr9:110038200-110042200	Weak transcription	HMEC	breast

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