Variant report

Variant	rs72738204
Chromosome Location	chr9:110066678-110066679
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110044750..110046904-chr9:110066196..110068105,2	K562	blood:
2	chr9:110066546..110068820-chr9:110070099..110072888,2	K562	blood:
3	chr9:110060491..110063428-chr9:110066349..110068184,2	MCF-7	breast:
4	chr9:110065252..110067384-chr9:110080833..110082892,2	K562	blood:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11573614	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11573622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573628	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11573629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573675	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11573691	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11573693	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11573695	0.94[EUR][1000 genomes]
rs11573732	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1805330	0.94[EUR][1000 genomes]
rs41555117	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58278531	0.94[EUR][1000 genomes]
rs67197321	0.96[EUR][1000 genomes]
rs7038659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736111	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72736112	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72736117	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72736120	0.98[EUR][1000 genomes]
rs72736121	0.98[EUR][1000 genomes]
rs72736122	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72736180	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72736182	0.98[EUR][1000 genomes]
rs72736185	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72736186	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72736187	0.98[EUR][1000 genomes]
rs72736188	0.98[EUR][1000 genomes]
rs72736192	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72736196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738207	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72738211	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72738212	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72738213	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72738215	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72738216	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72738220	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72738224	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72738225	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72738229	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv519266	chr9:110049477-110085255	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110047600-110067200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:110048800-110067800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:110048800-110069600	Weak transcription	Fetal Brain Male	brain
4	chr9:110049200-110067000	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:110049400-110067800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:110051200-110067000	Weak transcription	Thymus	Thymus
7	chr9:110051600-110079200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:110052000-110066800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr9:110052600-110067000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:110052600-110067000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:110052600-110068600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:110052600-110068600	Weak transcription	Brain Germinal Matrix	brain
13	chr9:110052600-110068800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:110052600-110069200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr9:110053400-110068600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr9:110055600-110067600	Weak transcription	HSMMtube	muscle
17	chr9:110055600-110068600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr9:110055800-110068600	Weak transcription	Fetal Brain Female	brain
19	chr9:110055800-110068600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr9:110056800-110068600	Weak transcription	Lung	lung
21	chr9:110057200-110066800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr9:110057200-110067000	Weak transcription	Fetal Stomach	stomach
23	chr9:110057200-110067000	Weak transcription	Left Ventricle	heart
24	chr9:110057200-110068800	Weak transcription	Brain Substantia Nigra	brain
25	chr9:110057200-110079200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr9:110057400-110068600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr9:110057400-110068600	Weak transcription	Esophagus	oesophagus
28	chr9:110057400-110068600	Weak transcription	Gastric	stomach
29	chr9:110057400-110074600	Weak transcription	Spleen	Spleen
30	chr9:110057400-110074800	Weak transcription	Psoas Muscle	Psoas
31	chr9:110058000-110068600	Weak transcription	Aorta	Aorta
32	chr9:110058600-110068600	Weak transcription	Right Ventricle	heart
33	chr9:110058600-110074800	Weak transcription	Right Atrium	heart
34	chr9:110058600-110098600	Weak transcription	Small Intestine	intestine
35	chr9:110059800-110068600	Weak transcription	Pancreas	Pancrea
36	chr9:110060000-110067200	Weak transcription	Fetal Intestine Small	intestine
37	chr9:110060200-110070000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr9:110061400-110068600	Weak transcription	Brain Angular Gyrus	brain
39	chr9:110061400-110094600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr9:110061600-110073400	Strong transcription	K562	blood
41	chr9:110061800-110067800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr9:110061800-110068400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr9:110061800-110068600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr9:110061800-110068800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr9:110062000-110066800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr9:110062000-110066800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr9:110062000-110067000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr9:110062000-110067000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr9:110062000-110067000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr9:110062000-110068600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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