Variant report

Variant	rs72827866
Chromosome Location	chr6:16825383-16825384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10949384	0.87[ASN][1000 genomes]
rs11963151	1.00[ASN][1000 genomes]
rs12209243	1.00[ASN][1000 genomes]
rs12213812	0.92[AFR][1000 genomes]
rs56267967	1.00[ASN][1000 genomes]
rs56404205	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs593961	0.82[EUR][1000 genomes]
rs621064	0.89[ASN][1000 genomes]
rs624591	0.89[ASN][1000 genomes]
rs652255	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827862	0.92[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs72827865	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827871	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72827874	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532022	chr6:16448152-16825567	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16823800-16826400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:16824400-16826400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:16824600-16825400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:16824600-16826400	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:16824600-16826400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:16824800-16825600	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:16824800-16826000	Enhancers	GM12878-XiMat	blood
8	chr6:16824800-16826000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr6:16825000-16825800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:16825000-16829600	Weak transcription	Liver	Liver
11	chr6:16825200-16825400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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