Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:16824225..16826856-chr6:16948026..16950129,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10949384	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11963151	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12189719	0.87[AMR][1000 genomes]
rs12190567	0.87[AMR][1000 genomes]
rs12191511	0.87[AMR][1000 genomes]
rs12209243	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209732	0.87[AMR][1000 genomes]
rs12213812	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12216494	0.87[AMR][1000 genomes]
rs56267967	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56404205	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs593961	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs621064	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs624591	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs652255	1.00[ASN][1000 genomes]
rs72827862	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72827866	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827871	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827880	0.87[AMR][1000 genomes]
rs72827883	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532022	chr6:16448152-16825567	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16820200-16825000	Enhancers	Liver	Liver
2	chr6:16823600-16824800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:16823800-16824800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr6:16823800-16826400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:16824400-16826400	Enhancers	Primary monocytes fromperipheralblood	blood

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