Variant report
| Variant | rs621064 |
|---|---|
| Chromosome Location | chr6:16812072-16812073 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:16804427..16807137-chr6:16810688..16813174,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10949384 | 0.83[EUR][1000 genomes] |
| rs11963151 | 0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12189719 | 0.87[AMR][1000 genomes] |
| rs12190567 | 0.87[AMR][1000 genomes] |
| rs12191511 | 0.87[AMR][1000 genomes] |
| rs12209243 | 0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12209732 | 0.87[AMR][1000 genomes] |
| rs12213812 | 1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12216494 | 0.87[AMR][1000 genomes] |
| rs56267967 | 1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs56404205 | 1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs593961 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs624591 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs652255 | 0.89[ASN][1000 genomes] |
| rs72827862 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72827865 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72827866 | 0.89[ASN][1000 genomes] |
| rs72827871 | 1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72827880 | 0.87[AMR][1000 genomes] |
| rs72827883 | 0.87[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532022 | chr6:16448152-16825567 | ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031423 | chr6:16467215-16823725 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv1015992 | chr6:16469059-16846847 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 4 | nsv538148 | chr6:16469059-16846847 | Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:16805800-16812600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr6:16811800-16813800 | ZNF genes & repeats | Monocytes-CD14+_RO01746 | blood |
