Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:16833227..16835393-chr6:16851673..16854515,2	K562	blood:
2	chr6:16834851..16837013-chr6:16841039..16842548,2	K562	blood:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10949384	1.00[EUR][1000 genomes]
rs11963151	1.00[EUR][1000 genomes]
rs12189719	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12190567	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12191511	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12194266	0.87[EUR][1000 genomes]
rs12200410	0.87[EUR][1000 genomes]
rs12204343	0.87[EUR][1000 genomes]
rs12204405	0.87[EUR][1000 genomes]
rs12209243	0.95[EUR][1000 genomes]
rs12209732	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12216494	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1744556	0.83[EUR][1000 genomes]
rs28371453	0.87[EUR][1000 genomes]
rs56267967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56404205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs593961	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs621064	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs624591	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72827862	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72827865	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72827866	0.92[AFR][1000 genomes]
rs72827871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72827880	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72827883	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs770936	0.83[EUR][1000 genomes]
rs797579	0.83[EUR][1000 genomes]
rs9477232	0.87[EUR][1000 genomes]
rs9477234	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16828400-16836200	Weak transcription	GM12878-XiMat	blood
2	chr6:16829400-16836600	Weak transcription	Right Atrium	heart
3	chr6:16831000-16836200	Weak transcription	Fetal Thymus	thymus
4	chr6:16831400-16836600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:16831600-16836200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:16832800-16836000	Weak transcription	Fetal Lung	lung
7	chr6:16832800-16836200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:16832800-16836200	Weak transcription	Adipose Nuclei	Adipose
9	chr6:16832800-16836200	Weak transcription	Fetal Brain Female	brain
10	chr6:16832800-16836200	Weak transcription	Fetal Heart	heart
11	chr6:16833000-16836000	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:16833000-16836200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:16833000-16836200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:16833200-16836400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:16833400-16836400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:16833400-16836400	Weak transcription	NH-A	brain
17	chr6:16833400-16836800	Weak transcription	Liver	Liver
18	chr6:16834800-16837000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:16835000-16835400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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