Variant report

Variant	rs797579
Chromosome Location	chr6:16868237-16868238
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:16866282..16868512-chr6:16869553..16872906,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10949384	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11963151	0.83[EUR][1000 genomes]
rs12189719	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12190567	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191511	0.92[EUR][1000 genomes]
rs12194266	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198579	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200410	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201340	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204343	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204405	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209732	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12213812	0.83[EUR][1000 genomes]
rs12216494	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1617072	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1617978	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1744556	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1776477	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28371453	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55654726	0.96[EUR][1000 genomes]
rs56092197	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56267967	0.83[EUR][1000 genomes]
rs56311230	0.96[EUR][1000 genomes]
rs56404205	0.83[EUR][1000 genomes]
rs72827871	0.83[EUR][1000 genomes]
rs72827874	1.00[ASN][1000 genomes]
rs72827880	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72827883	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs770936	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9477232	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9477234	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1838885	chr6:16866948-16885765	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1837694	chr6:16866948-16885869	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1842967	chr6:16866948-16885869	Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16868000-16869600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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