Variant report

Variant	rs56404205
Chromosome Location	chr6:16832823-16832824
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:16817827..16820153-chr6:16832159..16834684,2	K562	blood:
2	chr6:16831439..16834686-chr6:16840301..16843273,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10949384	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11963151	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12189719	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12190567	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12191511	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12194266	0.87[EUR][1000 genomes]
rs12200410	0.87[EUR][1000 genomes]
rs12204343	0.87[EUR][1000 genomes]
rs12204405	0.87[EUR][1000 genomes]
rs12209243	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209732	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12213812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12216494	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1744556	0.83[EUR][1000 genomes]
rs28371453	0.87[EUR][1000 genomes]
rs56267967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs593961	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs621064	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs624591	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs652255	1.00[ASN][1000 genomes]
rs72827862	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72827865	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827866	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72827871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827880	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72827883	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs770936	0.83[EUR][1000 genomes]
rs797579	0.83[EUR][1000 genomes]
rs9477232	0.87[EUR][1000 genomes]
rs9477234	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16828400-16836200	Weak transcription	GM12878-XiMat	blood
2	chr6:16829400-16836600	Weak transcription	Right Atrium	heart
3	chr6:16831000-16836200	Weak transcription	Fetal Thymus	thymus
4	chr6:16831400-16833400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:16831400-16836600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:16831600-16836200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:16831800-16833400	Enhancers	Liver	Liver
8	chr6:16832000-16833000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:16832400-16834800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:16832600-16833000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:16832600-16833000	Enhancers	Fetal Muscle Leg	muscle
12	chr6:16832800-16833000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:16832800-16833000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr6:16832800-16833400	Enhancers	NH-A	brain
15	chr6:16832800-16836000	Weak transcription	Fetal Lung	lung
16	chr6:16832800-16836200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:16832800-16836200	Weak transcription	Adipose Nuclei	Adipose
18	chr6:16832800-16836200	Weak transcription	Fetal Brain Female	brain
19	chr6:16832800-16836200	Weak transcription	Fetal Heart	heart

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