Variant report

Variant	rs12191511
Chromosome Location	chr6:16852979-16852980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10949384	0.83[EUR][1000 genomes]
rs11963151	0.83[EUR][1000 genomes]
rs12189719	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12190567	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12194266	0.96[EUR][1000 genomes]
rs12198579	0.88[EUR][1000 genomes]
rs12200410	0.96[EUR][1000 genomes]
rs12201340	0.88[EUR][1000 genomes]
rs12204343	0.96[EUR][1000 genomes]
rs12204405	0.96[EUR][1000 genomes]
rs12209732	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12213812	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12216494	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1617072	0.88[EUR][1000 genomes]
rs1617978	0.88[EUR][1000 genomes]
rs1744556	0.92[EUR][1000 genomes]
rs1776477	0.88[EUR][1000 genomes]
rs28371453	0.96[EUR][1000 genomes]
rs55654726	0.88[EUR][1000 genomes]
rs56092197	0.88[EUR][1000 genomes]
rs56267967	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56311230	0.88[EUR][1000 genomes]
rs56404205	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs621064	0.87[AMR][1000 genomes]
rs624591	0.87[AMR][1000 genomes]
rs72827862	0.87[AMR][1000 genomes]
rs72827865	0.87[AMR][1000 genomes]
rs72827871	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72827880	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72827883	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs770936	0.92[EUR][1000 genomes]
rs797579	0.92[EUR][1000 genomes]
rs9477232	0.96[EUR][1000 genomes]
rs9477234	0.96[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16847800-16853600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:16849400-16853000	Enhancers	Primary hematopoietic stem cells	blood
3	chr6:16849800-16853400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:16849800-16853600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:16850200-16855000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:16851200-16855400	Weak transcription	HSMMtube	muscle
7	chr6:16851600-16855200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:16852200-16855400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:16852400-16853200	Enhancers	GM12878-XiMat	blood
10	chr6:16852400-16855200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:16852400-16855200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:16852400-16855400	Weak transcription	NHDF-Ad	bronchial
13	chr6:16852400-16856400	Weak transcription	Adipose Nuclei	Adipose
14	chr6:16852600-16853200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:16852600-16853400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:16852600-16855000	Weak transcription	Hela-S3	cervix
17	chr6:16852800-16853400	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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