Variant report

Variant	rs12189719
Chromosome Location	chr6:16852418-16852419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:16833227..16835393-chr6:16851673..16854515,2	K562	blood:
2	chr6:16763534..16766479-chr6:16850380..16853533,3	MCF-7	breast:
3	chr6:16849640..16852698-chr6:16854273..16856251,3	K562	blood:
4	chr6:16843780..16847710-chr6:16848313..16852729,4	K562	blood:

Variant related genes	Relation type
ENSG00000272341	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10949384	0.87[EUR][1000 genomes]
rs11963151	0.87[EUR][1000 genomes]
rs12190567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12191511	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12194266	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12198579	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12200410	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12201340	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12204343	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12204405	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12209243	0.82[EUR][1000 genomes]
rs12209732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213812	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12216494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1617072	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1617978	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1744556	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1776477	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28371453	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55654726	0.92[EUR][1000 genomes]
rs56092197	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56267967	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56311230	0.92[EUR][1000 genomes]
rs56404205	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs621064	0.87[AMR][1000 genomes]
rs624591	0.87[AMR][1000 genomes]
rs72827862	0.87[AMR][1000 genomes]
rs72827865	0.87[AMR][1000 genomes]
rs72827871	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72827874	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72827880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs770936	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs797579	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9477232	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9477234	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16847800-16853600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:16849400-16853000	Enhancers	Primary hematopoietic stem cells	blood
3	chr6:16849800-16853400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:16849800-16853600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:16850200-16855000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:16850800-16852600	Enhancers	Hela-S3	cervix
7	chr6:16851200-16855400	Weak transcription	HSMMtube	muscle
8	chr6:16851600-16855200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:16851800-16852800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr6:16852000-16852600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:16852000-16852800	Enhancers	Fetal Lung	lung
12	chr6:16852200-16855400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:16852400-16853200	Enhancers	GM12878-XiMat	blood
14	chr6:16852400-16855200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:16852400-16855200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:16852400-16855400	Weak transcription	NHDF-Ad	bronchial
17	chr6:16852400-16856400	Weak transcription	Adipose Nuclei	Adipose

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